Package: pqsfinder 2.21.0

Jiri Hon

pqsfinder: Identification of potential quadruplex forming sequences

Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.

Authors:Jiri Hon, Dominika Labudova, Matej Lexa and Tomas Martinek

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pqsfinder.pdf |pqsfinder.html✨
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NEWS

# Install 'pqsfinder' in R:
install.packages('pqsfinder', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:pqsfinder-2.21.0(bioc 3.20)pqsfinder-2.20.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 0.82 score 21 dependencies 8 mentions

Last updated 2 months agofrom:e6181131d4

Exports:maxScorespqsfinderPQSViews

Dependencies:askpassBHBiocGenericsBiostringscrayoncurlGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc

pqsfinder: User Guide

Jiří Hon, Matej Lexa, Tomáš Martínek

Rendered frompqsfinder.Rmdusingknitr::rmarkdownon Jun 22 2024.

Last update: 2019-10-10
Started: 2016-04-06