Package: plotgardenerData 1.19.0

Nicole Kramer

plotgardenerData: Datasets and test data files for the plotgardener package

This is a supplemental data package for the plotgardener package. Includes example datasets used in plotgardener vignettes and example raw data files. For details on how to use these datasets, see the plotgardener package vignettes.

Authors:Nicole Kramer [aut, cre]

plotgardenerData_1.19.0.tar.gz
plotgardenerData_1.19.0.tar.gz(r-4.7-any)plotgardenerData_1.19.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
plotgardenerData/json (API)

# Install 'plotgardenerData' in R:

install.packages('plotgardenerData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/phanstiellab/plotgardenerdata/issues

Pkgdown/docs site:https://phanstiellab.github.io

Datasets:

COVID_NY_FL_tracking - Plotgardener example data for tracked COVID-19 cases in New York and Florida
COVID_NY_FL_vaccines - Plotgardener example data for COVID-19 vaccinations in New York and Florida
COVID_USA_cases - Plotgardener example map data for COVID-19 cases in the United States
GM12878_ChIP_CTCF_signal - Plotgardener example GM12878 CTCF ChIP signal data
GM12878_ChIP_H3K27ac_signal - Plotgardener example GM12878 H3K27ac ChIP signal data
GM12878_HiC_10kb - Plotgardener example GM12878 Hi-C data at 10 Kb resolution
hg19_insulin_GWAS - Plotgardener example insulin GWAS data
IMR90_ChIP_CTCF_reads - Plotgardener example CTCF read data
IMR90_ChIP_CTCF_signal - Plotgardener example IMR90 CTCF ChIP signal data
IMR90_ChIP_H3K27ac_signal - Plotgardener example IMR90 H3K27ac ChIP signal data
IMR90_DNAloops_pairs - Plotgardener example DNA loop pair data
IMR90_HiC_10kb - Plotgardener example IMR90 Hi-C data at 10 Kb resolution

On BioConductor:plotgardenerData-1.19.0(data/experiment 3.24)plotgardenerData-1.18.0(data/experiment 3.23)

experimentdata homo_sapiens_data expressiondata genome chipseqdata encode datapkg

5.50 score 1 stars 158 scripts 0 exports 0 dependencies

Last updated from:cfb9c5b1e2. Checks:3 WARNING, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	120
linux-devel	WARNING	181
source / vignettes	OK	141
linux-release	WARNING	137

Exports:

Dependencies:

plotgardenerData

Sample experimental data | Sample raw files | Session info

Rendered fromplotgardenerData.Rmdusingknitr::rmarkdown

Last update: 2021-08-19
Started: 2021-08-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
plotgardener example data for tracked COVID-19 cases in New York and Florida	COVID_NY_FL_tracking
plotgardener example data for COVID-19 vaccinations in New York and Florida	COVID_NY_FL_vaccines
plotgardener example map data for COVID-19 cases in the United States	COVID_USA_cases
plotgardener example GM12878 CTCF ChIP signal data	GM12878_ChIP_CTCF_signal
plotgardener example GM12878 H3K27ac ChIP signal data	GM12878_ChIP_H3K27ac_signal
plotgardener example GM12878 Hi-C data at 10 Kb resolution	GM12878_HiC_10kb
plotgardener example insulin GWAS data	hg19_insulin_GWAS
plotgardener example CTCF read data	IMR90_ChIP_CTCF_reads
plotgardener example IMR90 CTCF ChIP signal data	IMR90_ChIP_CTCF_signal
plotgardener example IMR90 H3K27ac ChIP signal data	IMR90_ChIP_H3K27ac_signal
plotgardener example DNA loop pair data	IMR90_DNAloops_pairs
plotgardener example IMR90 Hi-C data at 10 Kb resolution	IMR90_HiC_10kb