Package: planet 1.15.0

Victor Yuan

planet: Placental DNA methylation analysis tools

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

Authors:Victor Yuan [aut, cre], Wendy P. Robinson [ctb]

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NEWS

# Install 'planet' in R:
install.packages('planet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/wvictor14/planet/issues

Pkgdown site:https://victor.rbind.io

Datasets:

On BioConductor:planet-1.15.0(bioc 3.21)planet-1.14.0(bioc 3.20)

softwaredifferentialmethylationepigeneticsmicroarraymethylationarraydnamethylationcpgislandancestrydna-methylation-datageneticsinferencemachine-learningplacenta

5.64 score 4 stars 1 packages 12 scripts 318 downloads 1 mentions 5 exports 16 dependencies

Last updated 2 months agofrom:e49c969c82. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 04 2024
R-4.5-winNOTEDec 04 2024
R-4.5-linuxNOTEDec 04 2024
R-4.4-winNOTEDec 04 2024
R-4.4-macNOTEDec 04 2024
R-4.3-winNOTEDec 04 2024
R-4.3-macNOTEDec 04 2024

Exports:%>%pl_infer_agepl_infer_ethnicitypredictAgepredictEthnicity

Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr

planet

Rendered fromplanet.Rmdusingknitr::rmarkdownon Dec 04 2024.

Last update: 2023-09-08
Started: 2021-03-10