Package: planet 1.21.0

Victor Yuan

planet: Placental DNA methylation analysis tools

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

Authors:Victor Yuan [aut, cre], Wendy P. Robinson [aut, ctb], Icíar Fernández-Boyano [aut, ctb]

planet_1.21.0.tar.gz
planet_1.21.0.zip(r-4.7-any)planet_1.21.0.zip(r-4.6-any)planet_1.21.0.zip(r-4.5-any)
planet_1.21.0.tgz(r-4.6-any)planet_1.21.0.tgz(r-4.5-any)
planet_1.21.0.tar.gz(r-4.7-any)planet_1.21.0.tar.gz(r-4.6-any)
planet_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
planet/json (API)

# Install 'planet' in R:
install.packages('planet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wvictor14/planet/issues

Pkgdown/docs site:https://victoryuan.com

Datasets:

On BioConductor:planet-1.21.0(bioc 3.24)planet-1.20.0(bioc 3.23)

softwaredifferentialmethylationepigeneticsmicroarraymethylationarraydnamethylationcpgislandancestrydna-methylation-datageneticsinferencemachine-learningplacenta

4.61 score 4 stars 34 scripts 738 downloads 1 mentions 4 exports 15 dependencies

Last updated from:8086bc5eb5. Checks:1 WARNING, 8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING168
linux-develERROR273
source / vignettesERROR311
linux-releaseERROR277
macos-releaseERROR161
macos-oldrelERROR167
windows-develERROR145
windows-releaseERROR145
windows-oldrelERROR160
wasm-releaseOK138

Exports:%>%predictAgepredictEthnicitypredictPreeclampsia

Dependencies:clidplyrgenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr