Package: planet 1.13.0
Victor Yuan
planet: Placental DNA methylation analysis tools
This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.
Authors:
planet_1.13.0.tar.gz
planet_1.13.0.zip(r-4.5)planet_1.13.0.zip(r-4.4)planet_1.13.0.zip(r-4.3)
planet_1.13.0.tgz(r-4.4-any)planet_1.13.0.tgz(r-4.3-any)
planet_1.13.0.tar.gz(r-4.5-noble)planet_1.13.0.tar.gz(r-4.4-noble)
planet_1.13.0.tgz(r-4.4-emscripten)planet_1.13.0.tgz(r-4.3-emscripten)
planet.pdf |planet.html✨
planet/json (API)
NEWS
| # Install 'planet' in R: |
| install.packages('planet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wvictor14/planet/issues
- ageCpGs - Placental gestational age CpGs
- ethnicityCpGs - CpGs to predict ethnicity
- plBetas - Example placental DNA methylation data
- plCellCpGsFirst - First trimester placental cell type coefficients
- plCellCpGsThird - Third trimester placental cell type coefficients
- plColors - A color palette for placental cell types
- plPhenoData - Sample information accompanying 'pl_betas'
On BioConductor:planet-1.13.0(bioc 3.20)planet-1.12.0(bioc 3.19)
Last updated 2 months agofrom:6513ac49a4
Exports:%>%pl_infer_agepl_infer_ethnicitypredictAgepredictEthnicity
Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Placental gestational age CpGs | ageCpGs |
| CpGs to predict ethnicity | ethnicityCpGs |
| Deprecated functions in 'planet' | planet-deprecated |
| Example placental DNA methylation data | plBetas |
| First trimester placental cell type coefficients | plCellCpGsFirst |
| Third trimester placental cell type coefficients | plCellCpGsThird |
| A color palette for placental cell types | plColors |
| Sample information accompanying 'pl_betas' | plPhenoData |
| Predicts gestational age using placental DNA methylation microarray data | pl_infer_age predictAge |
| Predicts ethnicity using placental DNA methylation microarray data | pl_infer_ethnicity predictEthnicity |
