Package: planet 1.15.5

Victor Yuan

planet: Placental DNA methylation analysis tools

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

Authors:Victor Yuan [aut, cre], Wendy P. Robinson [aut, ctb], Icíar Fernández-Boyano [aut, ctb]

planet_1.15.5.tar.gz
planet_1.15.5.zip(r-4.5)planet_1.15.5.zip(r-4.4)planet_1.15.5.zip(r-4.3)
planet_1.15.5.tgz(r-4.5-any)planet_1.15.5.tgz(r-4.4-any)planet_1.15.5.tgz(r-4.3-any)
planet_1.15.5.tar.gz(r-4.5-noble)planet_1.15.5.tar.gz(r-4.4-noble)
planet_1.15.5.tgz(r-4.4-emscripten)planet_1.15.5.tgz(r-4.3-emscripten)
planet.pdf |planet.html✨
planet/json (API)
NEWS

# Install 'planet' in R:
install.packages('planet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wvictor14/planet/issues

Pkgdown site:https://victoryuan.com

Datasets:

On BioConductor:planet-1.15.0(bioc 3.21)planet-1.14.0(bioc 3.20)

softwaredifferentialmethylationepigeneticsmicroarraymethylationarraydnamethylationcpgislandancestrydna-methylation-datageneticsinferencemachine-learningplacenta

5.64 score 4 stars 1 packages 12 scripts 370 downloads 1 mentions 4 exports 16 dependencies

Last updated 18 days agofrom:faa241323c. Checks:1 OK, 5 NOTE, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 02 2025
R-4.5-winNOTEFeb 02 2025
R-4.5-macERRORFeb 02 2025
R-4.5-linuxNOTEFeb 02 2025
R-4.4-winNOTEFeb 02 2025
R-4.4-macNOTEFeb 02 2025
R-4.3-winNOTEFeb 02 2025
R-4.3-macERRORFeb 02 2025

Exports:%>%predictAgepredictEthnicitypredictPreeclampsia

Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr

planet

Rendered fromplanet.Rmdusingknitr::rmarkdownon Feb 02 2025.

Last update: 2025-02-01
Started: 2021-03-10