Package: pgen2gds 0.99.3

Xiuwen Zheng

pgen2gds: Format Conversion from PLINK2 PGEN to GDS

Provides functions to convert files from the PLINK2 pgen format to SeqArray GDS.

Authors:Xiuwen Zheng [aut, cre]

pgen2gds_0.99.3.tar.gz
pgen2gds_0.99.3.zip(r-4.7)pgen2gds_0.99.3.zip(r-4.6)pgen2gds_0.99.3.zip(r-4.5)
pgen2gds_0.99.3.tgz(r-4.6-x86_64)pgen2gds_0.99.3.tgz(r-4.6-arm64)pgen2gds_0.99.3.tgz(r-4.5-x86_64)pgen2gds_0.99.3.tgz(r-4.5-arm64)
pgen2gds_0.99.3.tar.gz(r-4.7-arm64)pgen2gds_0.99.3.tar.gz(r-4.7-x86_64)pgen2gds_0.99.3.tar.gz(r-4.6-arm64)pgen2gds_0.99.3.tar.gz(r-4.6-x86_64)
pgen2gds_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pgen2gds/json (API)
NEWS

# Install 'pgen2gds' in R:
install.packages('pgen2gds', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zhengxwen/pgen2gds/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:pgen2gds-0.99.3(bioc 3.24)

infrastructuredataimportgeneticsgdsplinkcpp

4.81 score 3 scripts 2 exports 14 dependencies

Last updated from:e52625a6d8. Checks:4 NOTE, 10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE143
linux-devel-arm64OK211
linux-devel-x86_64OK166
source / vignettesOK212
linux-release-arm64OK157
linux-release-x86_64OK207
macos-release-arm64OK110
macos-release-x86_64OK208
macos-oldrel-arm64NOTE134
macos-oldrel-x86_64NOTE246
windows-develOK124
windows-releaseOK122
windows-oldrelNOTE172
wasm-releaseOK108

Exports:seqPGEN2GDSseqReadPVAR

Dependencies:BiocGenericsBiostringscrayondigestgdsfmtgenericsGenomicRangesIRangespgenlibrRcppS4VectorsSeqArraySeqinfoXVector

Format Conversion from PLINK2 PGEN to SeqArray GDS

Xiuwen Zheng

Rendered frompgen2gds.Rmdusingknitr::rmarkdownon Jun 14 2026.

Last update: 2026-06-12
Started: 2026-04-11