Introduction | Peptide collections | Loading the collections | Create collections
Package: pepDat 1.33.0
Renan Sauteraud
pepDat: Peptide microarray data package
Provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.
Authors:
pepDat_1.33.0.tar.gz
pepDat_1.33.0.tar.gz(r-4.7-any)pepDat_1.33.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pepDat/json (API)
| # Install 'pepDat' in R: |
| install.packages('pepDat', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- pep_hxb2 - Reference peptide dataset for HIV enveloppe
- pep_hxb2JPT - Peptide collection for HXB2 and JPT clades
- pep_m239smE543 - Peptide collection for SIV enveloppe
- pep_mac239 - Reference peptide dataset for SIV enveloppe
- restab - Summary tables from pepStat
- restab_aggregate - Summary tables from pepStat
On BioConductor:pepDat-1.33.0(data/experiment 3.24)pepDat-1.32.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:0dd86467ef. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 120 | ||
| linux-devel | NOTE | 218 | ||
| source / vignettes | OK | 152 | ||
| linux-release | NOTE | 166 |
Exports:
Dependencies:BiocGenericsgenericsGenomicRangesIRangesS4VectorsSeqinfo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reference peptide dataset for HIV enveloppe | pep_hxb2 |
| Peptide collection for HXB2 and JPT clades | pep_hxb2JPT |
| Peptide collection for SIV enveloppe | pep_m239smE543 |
| Reference peptide dataset for SIV enveloppe | pep_mac239 |
| Summary tables from pepStat | restab restab_aggregate |