Package: pandaR 1.39.0

Joseph N. Paulson

pandaR: PANDA Algorithm

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Authors:Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

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pandaR.pdf |pandaR.html✨
pandaR/json (API)

# Install 'pandaR' in R:
install.packages('pandaR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • pandaResult - Analysis result from PANDA algorithm on toy data
  • pandaResultPairs - Analysis result from PANDA algorithm on toy data converted into pairs
  • pandaToyData - Toy gene expression, motif, and ppi data

On BioConductor:pandaR-1.39.0(bioc 3.21)pandaR-1.38.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

statisticalmethodgraphandnetworkmicroarraygeneregulationnetworkinferencegeneexpressiontranscriptionnetwork

3.78 score 1 packages 8 scripts 260 downloads 1 mentions 14 exports 39 dependencies

Last updated 2 months agofrom:0d9c9dc81e. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesFAILNov 29 2024
R-4.5-winWARNINGNov 29 2024
R-4.5-linuxWARNINGNov 29 2024
R-4.4-winWARNINGNov 29 2024
R-4.4-macWARNINGNov 29 2024
R-4.3-winWARNINGNov 29 2024
R-4.3-macWARNINGNov 29 2024

Exports:calcDegreecalcDegreeDifferenceimportPandaMatlabmultiplotpandaplotCommunityDetectionplotGraphplotZplotZbyTFsubnetworksummary.pandatargetedGenestestMotiftopedges

Dependencies:BiobaseBiocGenericsclicolorspacecpp11fansifarvergenericsggplot2gluegtablehexbinigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshaperlangRUnitscalestibbleutf8vctrsviridisLitewithr

An Introduction to the pandaR Package

Daniel Schlauch, Albert Young, Joseph N. Paulson

Rendered frompandaR.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2016-05-01
Started: 2015-04-06