Package: pageRank 1.17.0

Hongxu Ding

pageRank: Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Authors:Hongxu Ding [aut, cre, ctb, cph]

pageRank_1.17.0.tar.gz
pageRank_1.17.0.zip(r-4.5)pageRank_1.17.0.zip(r-4.4)pageRank_1.17.0.zip(r-4.3)
pageRank_1.17.0.tgz(r-4.5-any)pageRank_1.17.0.tgz(r-4.4-any)pageRank_1.17.0.tgz(r-4.3-any)
pageRank_1.17.0.tar.gz(r-4.5-noble)pageRank_1.17.0.tar.gz(r-4.4-noble)
pageRank_1.17.0.tgz(r-4.4-emscripten)
pageRank.pdf |pageRank.html
pageRank/json (API)
NEWS

# Install 'pageRank' in R:
install.packages('pageRank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hd2326/pagerank/issues

On BioConductor:pageRank-1.17.0(bioc 3.21)pageRank-1.16.0(bioc 3.20)

statisticalmethodgenetargetnetwork

3.30 score 5 scripts 254 downloads 12 exports 77 dependencies

Last updated 5 months agofrom:a33df28ffc. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winNOTEMar 29 2025
R-4.5-macNOTEMar 29 2025
R-4.5-linuxNOTEMar 29 2025
R-4.4-winNOTEMar 29 2025
R-4.4-macNOTEMar 29 2025
R-4.4-linuxNOTEMar 29 2025
R-4.3-winNOTEMar 29 2025
R-4.3-macNOTEMar 29 2025

Exports:accessibility_networkadjust_grapharacne_networkbubble_plotclean_graphconformation_networkdiff_graphget_color_gradientmultiplex_page_rankP_graphP_nulltime_expmat

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcaToolsclicodetoolscpp11crayoncurlDBIDelayedArrayDirichletMultinomialfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluegtoolshttrigraphIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimemotifmatchropensslpkgconfigplogrpwalignR6RcppRcppArmadilloRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsseqLogosnowSparseArraySummarizedExperimentsysTFBSToolsTFMPvalueUCSC.utilsvctrsXMLXVectoryaml

pageRank

Rendered fromintroduction.rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2020-09-15
Started: 2020-09-04