Package: pageRank 1.17.0

Hongxu Ding

pageRank: Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Authors:Hongxu Ding [aut, cre, ctb, cph]

pageRank_1.17.0.tar.gz
pageRank_1.17.0.zip(r-4.5)pageRank_1.17.0.zip(r-4.4)pageRank_1.17.0.zip(r-4.3)
pageRank_1.17.0.tgz(r-4.4-any)pageRank_1.17.0.tgz(r-4.3-any)
pageRank_1.17.0.tar.gz(r-4.5-noble)pageRank_1.17.0.tar.gz(r-4.4-noble)
pageRank_1.17.0.tgz(r-4.4-emscripten)
pageRank.pdf |pageRank.html
pageRank/json (API)
NEWS

# Install 'pageRank' in R:
install.packages('pageRank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hd2326/pagerank/issues

On BioConductor:pageRank-1.17.0(bioc 3.21)pageRank-1.16.0(bioc 3.20)

statisticalmethodgenetargetnetwork

3.30 score 5 scripts 162 downloads 12 exports 120 dependencies

Last updated 3 months agofrom:a33df28ffc. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winNOTEDec 30 2024
R-4.5-linuxNOTEDec 29 2024
R-4.4-winNOTEDec 30 2024
R-4.4-macNOTEDec 29 2024
R-4.3-winNOTENov 29 2024
R-4.3-macNOTEDec 29 2024

Exports:accessibility_networkadjust_grapharacne_networkbubble_plotclean_graphconformation_networkdiff_graphget_color_gradientmultiplex_page_rankP_graphP_nulltime_expmat

Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcaToolsclicliprCNErcodetoolscolorspacecpp11crayoncurlDBIDelayedArrayDirichletMultinomialfansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2glueGO.dbgtablegtoolshmshttrigraphIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemotifmatchrmunsellnlmeopensslpillarpkgconfigplogrplyrpngpoweRlawpracmaprettyunitsprogresspwalignR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalesseqLogosnowSparseArraystringistringrSummarizedExperimentsysTFBSToolsTFMPvaluetibbletidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLxtableXVectoryamlzlibbioc

pageRank

Rendered fromintroduction.rnwusingutils::Sweaveon Dec 29 2024.

Last update: 2020-09-15
Started: 2020-09-04