Package: pRolocdata 1.51.0

Lisa Breckels

pRolocdata: Data accompanying the pRoloc package

Mass-spectrometry based spatial proteomics data sets and protein complex separation data. Also contains the time course expression experiment from Mulvey et al. 2015.

Authors:Laurent Gatto [aut], Oliver Crook [aut], Lisa Breckels [cre, aut]

pRolocdata_1.51.0.tar.gz
pRolocdata_1.51.0.tar.gz(r-4.7-any)pRolocdata_1.51.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pRolocdata/json (API)

# Install 'pRolocdata' in R:
install.packages('pRolocdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lgatto/prolocdata/issues

Datasets:
  • andreyev2010 - Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al.
  • andreyev2010activ - Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al.
  • andreyev2010rest - Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al.
  • andy2011 - LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al.
  • andy2011goCC - LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al.
  • andy2011hpa - LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al.
  • at_chloro - The AT_CHLORO data base
  • baers2018 - Synechocystis spatial proteomics
  • Barylyuk2020ToxoLopit - Whole-cell spatial proteome of Toxoplasma: molecular anatomy of an apicomplexan cell
  • beltran2016HCMV120 - Data from Beltran et al. 2016
  • beltran2016HCMV24 - Data from Beltran et al. 2016
  • beltran2016HCMV48 - Data from Beltran et al. 2016
  • beltran2016HCMV72 - Data from Beltran et al. 2016
  • beltran2016HCMV96 - Data from Beltran et al. 2016
  • beltran2016MOCK120 - Data from Beltran et al. 2016
  • beltran2016MOCK24 - Data from Beltran et al. 2016
  • beltran2016MOCK48 - Data from Beltran et al. 2016
  • beltran2016MOCK72 - Data from Beltran et al. 2016
  • beltran2016MOCK96 - Data from Beltran et al. 2016
  • courtland_control - Genetic Disruption of WASHC4 Drives Endo-lysosomal Dysfunction and Cognitive-Movement Impairments in Mice and Humans
  • courtland_mutant - Genetic Disruption of WASHC4 Drives Endo-lysosomal Dysfunction and Cognitive-Movement Impairments in Mice and Humans
  • davies2018ap4b1 - AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
  • davies2018ap4e1 - AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
  • davies2018wt - AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
  • dunkley2006 - LOPIT data from Dunkley et al.
  • dunkley2006goCC - LOPIT data from Dunkley et al.
  • E14TG2aR - LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al.
  • E14TG2aS1 - LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al.
  • E14TG2aS1goCC - LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al.
  • E14TG2aS1yLoc - LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al.
  • E14TG2aS2 - LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al.
  • fabre2015r1 - Data from Fabre et al. 2015
  • fabre2015r2 - Data from Fabre et al. 2015
  • foster2006 - PCP data from Foster et al.
  • groen2014cmb - LOPIT experiments on Arabidopsis thaliana roots, from Groen et al.
  • groen2014r1 - LOPIT experiments on Arabidopsis thaliana roots, from Groen et al.
  • groen2014r1goCC - LOPIT experiments on Arabidopsis thaliana roots, from Groen et al.
  • groen2014r2 - LOPIT experiments on Arabidopsis thaliana roots, from Groen et al.
  • groen2014r3 - LOPIT experiments on Arabidopsis thaliana roots, from Groen et al.
  • hall2009 - LOPIT data from Hall et al.
  • havugimana2012 - Data from Havugimana et al. 2012
  • HEK293T2011 - LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al.
  • HEK293T2011goCC - LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al.
  • HEK293T2011hpa - LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al.
  • hirst2018 - Data from Hirst et al. 2018
  • hyperLOPIT2015 - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015_se - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015goCC - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms2 - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms2psm - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms3r1 - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms3r1psm - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms3r2 - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms3r2psm - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPIT2015ms3r3 - Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
  • hyperLOPITU2OS2017 - 2017 and 2018 hyperLOPIT on U2OS cells
  • hyperLOPITU2OS2017b - 2017 and 2018 hyperLOPIT on U2OS cells
  • hyperLOPITU2OS2018 - 2017 and 2018 hyperLOPIT on U2OS cells
  • itzhak2016helaCtrl - Global, quantitative and dynamic mapping of protein subcellular localization
  • itzhak2016helaEgf - Global, quantitative and dynamic mapping of protein subcellular localization
  • itzhak2016stcSILAC - Data from Itzhak et al.
  • itzhak2017 - Data from Itzhak et al. 2017
  • itzhak2017markers - Data from Itzhak et al. 2017
  • kirkwood2013 - Data from Kirkwood et al. 2013.
  • Kozik_con - Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunity
  • Kozik_pra - Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunity
  • Kozik_tam - Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunity
  • krahmer2018pcp - Subcellular Reorganization in Diet-Induced Hepatic Steatosis
  • krahmer2018phosphopcp - Subcellular Reorganization in Diet-Induced Hepatic Steatosis
  • kristensen2012r1 - Data from Kristensen et al. 2012
  • kristensen2012r2 - Data from Kristensen et al. 2012
  • kristensen2012r3 - Data from Kristensen et al. 2012
  • lopimsSyn1 - LOPIMS data for the Synapter 2.0 paper
  • lopimsSyn2 - LOPIMS data for the Synapter 2.0 paper
  • lopimsSyn2_0frags - LOPIMS data for the Synapter 2.0 paper
  • lopitdcU2OS2018 - 2017 and 2018 hyperLOPIT on U2OS cells
  • lpsTimecourse_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • lpsTimecourse_rep1_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • lpsTimecourse_rep2_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • lpsTimecourse_rep3_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • moloneyTbBSF - Spatial proteomics datasets from two African trypanosome species
  • moloneyTbPCF - Spatial proteomics datasets from two African trypanosome species
  • moloneyTcBSF - Spatial proteomics datasets from two African trypanosome species
  • moloneyTcPCF - Spatial proteomics datasets from two African trypanosome species
  • mulvey2015 - Data from Mulvey et al. 2015
  • mulvey2015_se - Data from Mulvey et al. 2015
  • mulvey2015norm - Data from Mulvey et al. 2015
  • mulvey2015norm_se - Data from Mulvey et al. 2015
  • nikolovski2012 - Meta-analysis from Nikolovski et al.
  • nikolovski2012imp - Meta-analysis from Nikolovski et al.
  • nikolovski2014 - LOPIMS data from Nikolovski et al.
  • orre2019a431 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019h322 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019hcc827 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019hcc827gef - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019hcc827rep1 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019hcc827rep2 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019hcc827rep3 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019mcf7 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • orre2019u251 - SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
  • psms_lpsTimecourse_rep1_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • psms_lpsTimecourse_rep2_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • psms_lpsTimecourse_rep3_mulvey2021 - Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
  • psms_thpLOPIT_lps_rep1_set1 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_lps_rep1_set2 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_lps_rep2_set1 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_lps_rep2_set2 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_lps_rep3_set1 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_lps_rep3_set2 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_unstim_rep1_set1 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_unstim_rep1_set2 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_unstim_rep2_set1 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_unstim_rep2_set2 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_unstim_rep3_set1 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • psms_thpLOPIT_unstim_rep3_set2 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • rodriguez2012r1 - Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al.
  • rodriguez2012r2 - Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al.
  • rodriguez2012r3 - Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al.
  • Shin2019MitoControlrep1 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoControlrep2 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoControlrep3 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoGcc88rep1 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoGcc88rep2 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoGcc88rep3 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoGol97rep1 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoGol97rep2 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • Shin2019MitoGol97rep3 - Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
  • stekhoven2014 - Data from Stekhoven et al. 2014
  • tan2009r1 - LOPIT data from Tan et al.
  • tan2009r1goCC - LOPIT data from Tan et al.
  • tan2009r2 - LOPIT data from Tan et al.
  • tan2009r3 - LOPIT data from Tan et al.
  • thpLOPIT_lps_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_lps_rep1_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_lps_rep2_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_lps_rep3_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_unstimulated_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_unstimulated_rep1_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_unstimulated_rep2_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • thpLOPIT_unstimulated_rep3_mulvey2021 - Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
  • trotter2010 - LOPIT data sets used in Trotter et al.
  • trotter2010shallow - LOPIT data sets used in Trotter et al.
  • trotter2010steep - LOPIT data sets used in Trotter et al.
  • yeast2018 - Saccharomyces cerevisiae spatial proteomics

On BioConductor:pRolocdata-1.51.0(data/experiment 3.24)pRolocdata-1.50.0(data/experiment 3.23)

experimentdatahomo_sapiens_datamassspectrometrydataarabidopsis_thaliana_datadrosophila_melanogaster_datamus_musculus_datastemcellproteomedatapkg

6.92 score 6 stars 1 packages 255 scripts 2 exports 126 dependencies

Last updated from:0f2bea9245. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR175
linux-develNOTE628
source / vignettesOK761
linux-releaseNOTE511

Exports:pRolocdatapRolocmetadata

Dependencies:abindaffyaffyioAnnotationFilteraskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocManagerBiocParallelbslibcachemcliclueclustercodetoolscpp11crosstalkcurldata.tableDelayedArraydigestdir.expirydoParalleldplyrevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMSnbaseMultiAssayExperimentmzIDmzRncdf4opensslotelpcaMethodspillarpkgconfigplotlyplyrpreprocessCorepromisesProtGenericsPSMatchPTModspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitevsnwithrxfunXMLXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al. (2009)andreyev2010 andreyev2010activ andreyev2010rest
LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)andy2011 andy2011goCC andy2011hpa HEK293T2011 HEK293T2011goCC HEK293T2011hpa
The AT_CHLORO data baseat_chloro
Synechocystis spatial proteomicsbaers2018 synechocystis
Data from Beltran et al. 2016beltran2016 beltran2016HCMV120 beltran2016HCMV24 beltran2016HCMV48 beltran2016HCMV72 beltran2016HCMV96 beltran2016MOCK120 beltran2016MOCK24 beltran2016MOCK48 beltran2016MOCK72 beltran2016MOCK96
Genetic Disruption of WASHC4 Drives Endo-lysosomal Dysfunction and Cognitive-Movement Impairments in Mice and Humanscourtland_control courtland_mutant
AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9Adavies2018ap4b1 davies2018ap4e1 davies2018wt
LOPIT data from Dunkley et al. (2006)dunkley2006 dunkley2006goCC
LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al. (2016)E14TG2a E14TG2aR E14TG2aS1 E14TG2aS1goCC E14TG2aS1yLoc E14TG2aS2
Data from Fabre et al. 2015fabre2015 fabre2015r1 fabre2015r2
PCP data from Foster et al. (2006)foster2006
LOPIT experiments on Arabidopsis thaliana roots, from Groen et al. (2014)groen2014 groen2014cmb groen2014r1 groen2014r1goCC groen2014r2 groen2014r3
LOPIT data from Hall et al. (2009)hall2009
Data from Havugimana et al. 2012havugimana2012
Data from Hirst et al. 2018hirst2018
Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).hyperLOPIT2015 hyperLOPIT2015goCC hyperLOPIT2015ms2 hyperLOPIT2015ms2psm hyperLOPIT2015ms3r1 hyperLOPIT2015ms3r1psm hyperLOPIT2015ms3r2 hyperLOPIT2015ms3r2psm hyperLOPIT2015ms3r3 hyperLOPIT2015_se
2017 and 2018 hyperLOPIT on U2OS cellshyperLOPITU2OS2017 hyperLOPITU2OS2017b hyperLOPITU2OS2018 lopitdcU2OS2018 U2OS
Data from Itzhak et al. (2016)itzhak2016stcSILAC
Global, quantitative and dynamic mapping of protein subcellular localizationitzhak2016helaCtrl itzhak2016helaEgf
Data from Itzhak et al. 2017itzhak2017 itzhak2017markers
Data from Kirkwood et al. 2013.kirkwood2013
Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunityKozik_con Kozik_pra Kozik_tam
Subcellular Reorganization in Diet-Induced Hepatic Steatosiskrahmer2018pcp krahmer2018phosphopcp
Data from Kristensen et al. 2012kristensen2012 kristensen2012r1 kristensen2012r2 kristensen2012r3
LOPIMS data for the Synapter 2.0 paperlopimsSyn1 lopimsSyn2 lopimsSyn2_0frags
Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPSlpsTimecourse_mulvey2021 lpsTimecourse_rep1_mulvey2021 lpsTimecourse_rep2_mulvey2021 lpsTimecourse_rep3_mulvey2021 psms_lpsTimecourse_rep1_mulvey2021 psms_lpsTimecourse_rep2_mulvey2021 psms_lpsTimecourse_rep3_mulvey2021
Spatial proteomics datasets from two African trypanosome speciesmoloneyTbBSF moloneyTbPCF moloneyTcBSF moloneyTcPCF
Data from Mulvey et al. 2015mulvey2015 mulvey2015norm mulvey2015norm_se mulvey2015_se
Meta-analysis from Nikolovski et al. (2012)nikolovski2012 nikolovski2012imp
LOPIMS data from Nikolovski et al. (2014)nikolovski2014
SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalizationorre2019a431 orre2019h322 orre2019hcc827 orre2019hcc827gef orre2019hcc827rep1 orre2019hcc827rep2 orre2019hcc827rep3 orre2019mcf7 orre2019u251
List of pRolocdata data setspRolocdata
Extract pRoloc metadataprint.pRolocmetadata pRolocmetadata
Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al. (2012)rodriguez-pineiro2012 rodriguez2012 rodriguez2012r1 rodriguez2012r2 rodriguez2012r3
Spatial proteomics defines the content of trafficking vesicles captured by golgin tethersShin2019MitoControlrep1 Shin2019MitoControlrep2 Shin2019MitoControlrep3 Shin2019MitoGcc88rep1 Shin2019MitoGcc88rep2 Shin2019MitoGcc88rep3 Shin2019MitoGol97rep1 Shin2019MitoGol97rep2 Shin2019MitoGol97rep3
Data from Stekhoven et al. 2014stekhoven2014
LOPIT data from Tan et al. (2009)tan2009 tan2009r1 tan2009r1goCC tan2009r2 tan2009r3
Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cellspsms_thpLOPIT_lps_rep1_set1 psms_thpLOPIT_lps_rep1_set2 psms_thpLOPIT_lps_rep2_set1 psms_thpLOPIT_lps_rep2_set2 psms_thpLOPIT_lps_rep3_set1 psms_thpLOPIT_lps_rep3_set2 psms_thpLOPIT_unstim_rep1_set1 psms_thpLOPIT_unstim_rep1_set2 psms_thpLOPIT_unstim_rep2_set1 psms_thpLOPIT_unstim_rep2_set2 psms_thpLOPIT_unstim_rep3_set1 psms_thpLOPIT_unstim_rep3_set2 thpLOPIT_lps_mulvey2021 thpLOPIT_lps_rep1_mulvey2021 thpLOPIT_lps_rep2_mulvey2021 thpLOPIT_lps_rep3_mulvey2021 thpLOPIT_unstimulated_mulvey2021 thpLOPIT_unstimulated_rep1_mulvey2021 thpLOPIT_unstimulated_rep2_mulvey2021 thpLOPIT_unstimulated_rep3_mulvey2021
Whole-cell spatial proteome of Toxoplasma: molecular anatomy of an apicomplexan cellBarylyuk2020ToxoLopit
LOPIT data sets used in Trotter et al. (2010)trotter2010 trotter2010shallow trotter2010steep
Saccharomyces cerevisiae spatial proteomics (2018)yeast2018