Package: ompBAM 1.9.0
Alex Chit Hei Wong
ompBAM: C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files
This packages provides C++ header files for developers wishing to create R packages that processes BAM files. ompBAM automates file access, memory management, and handling of multiple threads 'behind the scenes', so developers can focus on creating domain-specific functionality. The included vignette contains detailed documentation of this API, including quick-start instructions to create a new ompBAM-based package, and step-by-step explanation of the functionality behind the example packaged included within ompBAM.
Authors:
ompBAM_1.9.0.tar.gz
ompBAM_1.9.0.zip(r-4.5)ompBAM_1.9.0.zip(r-4.4)ompBAM_1.9.0.zip(r-4.3)
ompBAM_1.9.0.tgz(r-4.4-any)ompBAM_1.9.0.tgz(r-4.3-any)
ompBAM_1.9.0.tar.gz(r-4.5-noble)ompBAM_1.9.0.tar.gz(r-4.4-noble)
ompBAM_1.9.0.tgz(r-4.4-emscripten)ompBAM_1.9.0.tgz(r-4.3-emscripten)
ompBAM.pdf |ompBAM.html✨
ompBAM/json (API)
NEWS
| # Install 'ompBAM' in R: |
| install.packages('ompBAM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alexchwong/ompbam/issues
On BioConductor:ompBAM-1.9.0(bioc 3.20)ompBAM-1.8.0(bioc 3.19)
Last updated 2 months agofrom:a14035e67a
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ompBAM: C++ header library for parallel sequential reading of BAM files | ompBAM-package |
| Returns the path of a test BAM file | example_BAM |
| ompBAM Example | install_ompBAM_example |
| Sets up the package in the given directory to use ompBAM | use_ompBAM |
