Package: ompBAM 1.17.0

Alex Chit Hei Wong

ompBAM: C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files

This packages provides C++ header files for developers wishing to create R packages that processes BAM files. ompBAM automates file access, memory management, and handling of multiple threads 'behind the scenes', so developers can focus on creating domain-specific functionality. The included vignette contains detailed documentation of this API, including quick-start instructions to create a new ompBAM-based package, and step-by-step explanation of the functionality behind the example packaged included within ompBAM.

Authors:Alex Chit Hei Wong [aut, cre, cph]

ompBAM_1.17.0.tar.gz
ompBAM_1.17.0.zip(r-4.7)ompBAM_1.17.0.zip(r-4.6)ompBAM_1.17.0.zip(r-4.5)
ompBAM_1.17.0.tgz(r-4.6-any)ompBAM_1.17.0.tgz(r-4.5-any)
ompBAM_1.17.0.tar.gz(r-4.7-any)ompBAM_1.17.0.tar.gz(r-4.6-any)
ompBAM_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ompBAM/json (API)
NEWS

# Install 'ompBAM' in R:
install.packages('ompBAM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alexchwong/ompbam/issues

On BioConductor:ompBAM-1.17.0(bioc 3.24)ompBAM-1.16.0(bioc 3.23)

alignmentdataimportrnaseqsoftwaresequencingtranscriptomicssinglecell

5.68 score 4 stars 2 packages 8 scripts 344 downloads 3 exports 1 dependencies

Last updated from:bd0dbacf43. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING466
linux-devel-x86_64NOTE221
source / vignettesOK192
linux-release-x86_64NOTE156
macos-release-arm64NOTE117
macos-oldrel-arm64NOTE129
windows-develNOTE138
windows-releaseNOTE107
windows-oldrelNOTE107
wasm-releaseOK118

Exports:example_BAMinstall_ompBAM_exampleuse_ompBAM

Dependencies:Rcpp

ompBAM API Documentation

Alex C H Wong

Rendered fromompBAM-API-Docs.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-07-27
Started: 2021-09-06