Package: ompBAM 1.11.0

Alex Chit Hei Wong

ompBAM: C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files

This packages provides C++ header files for developers wishing to create R packages that processes BAM files. ompBAM automates file access, memory management, and handling of multiple threads 'behind the scenes', so developers can focus on creating domain-specific functionality. The included vignette contains detailed documentation of this API, including quick-start instructions to create a new ompBAM-based package, and step-by-step explanation of the functionality behind the example packaged included within ompBAM.

Authors:Alex Chit Hei Wong [aut, cre, cph]

ompBAM_1.11.0.tar.gz
ompBAM_1.11.0.zip(r-4.5)ompBAM_1.11.0.zip(r-4.4)ompBAM_1.11.0.zip(r-4.3)
ompBAM_1.11.0.tgz(r-4.5-any)ompBAM_1.11.0.tgz(r-4.4-any)ompBAM_1.11.0.tgz(r-4.3-any)
ompBAM_1.11.0.tar.gz(r-4.5-noble)ompBAM_1.11.0.tar.gz(r-4.4-noble)
ompBAM_1.11.0.tgz(r-4.4-emscripten)ompBAM_1.11.0.tgz(r-4.3-emscripten)
ompBAM.pdf |ompBAM.html✨
ompBAM/json (API)
NEWS

# Install 'ompBAM' in R:
install.packages('ompBAM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alexchwong/ompbam/issues

On BioConductor:ompBAM-1.11.0(bioc 3.21)ompBAM-1.10.0(bioc 3.20)

alignmentdataimportrnaseqsoftwaresequencingtranscriptomicssinglecell

5.78 score 4 stars 1 packages 3 scripts 250 downloads 3 exports 1 dependencies

Last updated 4 months agofrom:08d7d839a2. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macNOTEJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winNOTEJan 28 2025
R-4.4-macNOTEJan 28 2025
R-4.3-winNOTEJan 28 2025
R-4.3-macNOTEJan 28 2025

Exports:example_BAMinstall_ompBAM_exampleuse_ompBAM

Dependencies:Rcpp

ompBAM API Documentation

Alex C H Wong

Rendered fromompBAM-API-Docs.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2024-07-27
Started: 2021-09-06