Package: omicsPrint 1.27.0

Davy Cats

omicsPrint: Cross omic genetic fingerprinting

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Authors:Maarten van Iterson [aut], Davy Cats [cre]

omicsPrint_1.27.0.tar.gz
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omicsPrint.pdf |omicsPrint.html✨
omicsPrint/json (API)
NEWS

# Install 'omicsPrint' in R:
install.packages('omicsPrint', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:omicsPrint-1.27.0(bioc 3.21)omicsPrint-1.26.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontrolgeneticsepigeneticstranscriptomicsdnamethylationtranscriptiongeneticvariabilityimmunooncology

5.20 score 32 scripts 258 downloads 5 mentions 3 exports 51 dependencies

Last updated 5 months agofrom:8c45530ded. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 15 2025
R-4.5-winWARNINGMar 15 2025
R-4.5-macWARNINGMar 15 2025
R-4.5-linuxWARNINGMar 15 2025
R-4.4-winWARNINGMar 15 2025
R-4.4-macWARNINGMar 15 2025
R-4.4-linuxWARNINGMar 15 2025
R-4.3-winWARNINGMar 15 2025
R-4.3-macWARNINGMar 15 2025

Exports:alleleSharingbeta2genotypeinferRelations

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocGenericsclicpp11crayoncurlDelayedArraydplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmimeMultiAssayExperimentopensslpillarpkgconfigpurrrR6RaggedExperimentrlangS4ArraysS4VectorsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVector

omicsPrint: detection of data linkage errors in multiple omics studies

Maarten van Iterson, Davy Cats, Paul Hop, Bas T. Heijmans

Rendered fromomicsPrint.Rmdusingknitr::rmarkdownon Mar 15 2025.

Last update: 2017-12-14
Started: 2017-05-12