Package: omicsPrint 1.33.0

Davy Cats

omicsPrint: Cross omic genetic fingerprinting

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Authors:Maarten van Iterson [aut], Davy Cats [cre]

omicsPrint_1.33.0.tar.gz
omicsPrint_1.33.0.zip(r-4.7)omicsPrint_1.33.0.zip(r-4.6)omicsPrint_1.33.0.zip(r-4.5)
omicsPrint_1.33.0.tgz(r-4.6-any)omicsPrint_1.33.0.tgz(r-4.5-any)
omicsPrint_1.33.0.tar.gz(r-4.7-any)omicsPrint_1.33.0.tar.gz(r-4.6-any)
omicsPrint_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
omicsPrint/json (API)

# Install 'omicsPrint' in R:

install.packages('omicsPrint', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

hg19.GoNLsnps - Dataframe with overlaps GoNL variants and 450K probes
hm450.manifest.pop.GoNL - HM450 population-specific probe-masking recommendations

On BioConductor:omicsPrint-1.33.0(bioc 3.24)omicsPrint-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontrol genetics epigenetics transcriptomics dnamethylation transcription geneticvariability immunooncology

5.41 score 34 scripts 5 mentions 3 exports 40 dependencies

Last updated from:055a518b1e. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	278
linux-devel-x86_64	WARNING	447
source / vignettes	OK	391
linux-release-x86_64	WARNING	447
macos-release-arm64	WARNING	219
macos-oldrel-arm64	WARNING	241
windows-devel	WARNING	265
windows-release	WARNING	275
windows-oldrel	WARNING	257
wasm-release	OK	248

Exports:alleleSharing beta2genotype inferRelations

Dependencies:abind Biobase BiocBaseUtils BiocGenerics cli cpp11 DelayedArray dplyr generics GenomicRanges glue IRanges lattice lifecycle magrittr MASS Matrix MatrixGenerics matrixStats MultiAssayExperiment pillar pkgconfig purrr R6 RaggedExperiment rlang S4Arrays S4Vectors Seqinfo SparseArray stringi stringr SummarizedExperiment tibble tidyr tidyselect utf8 vctrs withr XVector

omicsPrint: detection of data linkage errors in multiple omics studies

Rendered fromomicsPrint.Rmdusingknitr::rmarkdown

Last update: 2026-06-22
Started: 2017-05-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
allele sharing based on ibs	alleleSharing
converts beta-values to genotypes (1, 2 and 3)	beta2genotype
Dataframe with overlaps GoNL variants and 450K probes	hg19.GoNLsnps
HM450 population-specific probe-masking recommendations	hm450.manifest.pop.GoNL
predict mismatches	inferRelations