Package: omicsPrint 1.27.0

Davy Cats

omicsPrint: Cross omic genetic fingerprinting

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Authors:Maarten van Iterson [aut], Davy Cats [cre]

omicsPrint_1.27.0.tar.gz
omicsPrint_1.27.0.zip(r-4.5)omicsPrint_1.27.0.zip(r-4.4)omicsPrint_1.27.0.zip(r-4.3)
omicsPrint_1.27.0.tgz(r-4.4-any)omicsPrint_1.27.0.tgz(r-4.3-any)
omicsPrint_1.27.0.tar.gz(r-4.5-noble)omicsPrint_1.27.0.tar.gz(r-4.4-noble)
omicsPrint_1.27.0.tgz(r-4.4-emscripten)omicsPrint_1.27.0.tgz(r-4.3-emscripten)
omicsPrint.pdf |omicsPrint.html✨
omicsPrint/json (API)
NEWS

# Install 'omicsPrint' in R:
install.packages('omicsPrint', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:omicsPrint-1.27.0(bioc 3.21)omicsPrint-1.26.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontrolgeneticsepigeneticstranscriptomicsdnamethylationtranscriptiongeneticvariabilityimmunooncology

5.20 score 32 scripts 213 downloads 5 mentions 3 exports 51 dependencies

Last updated 3 months agofrom:8c45530ded. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 14 2025
R-4.5-winWARNINGJan 14 2025
R-4.5-linuxWARNINGJan 14 2025
R-4.4-winWARNINGJan 14 2025
R-4.4-macWARNINGJan 14 2025
R-4.3-winWARNINGJan 14 2025
R-4.3-macWARNINGJan 14 2025

Exports:alleleSharingbeta2genotypeinferRelations

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocGenericsclicpp11crayoncurlDelayedArraydplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmimeMultiAssayExperimentopensslpillarpkgconfigpurrrR6RaggedExperimentrlangS4ArraysS4VectorsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVector

omicsPrint: detection of data linkage errors in multiple omics studies

Maarten van Iterson, Davy Cats, Paul Hop, Bas T. Heijmans

Rendered fromomicsPrint.Rmdusingknitr::rmarkdownon Jan 14 2025.

Last update: 2017-12-14
Started: 2017-05-12