{ "_id": "6a1ac1b21d7bb097a09d89fd", "Package": "omicsPrint", "Title": "Cross omic genetic fingerprinting", "Version": "1.33.0", "Authors@R": "c(\nperson(\"Maarten\", \"van Iterson\", email =\"mviterson@gmail.com\",\nrole = \"aut\"),\nperson(\"Davy\", \"Cats\", email = \"davycats.dc@gmail.com\",\nrole = \"cre\"))", "Description": "omicsPrint provides functionality for cross omic genetic\nfingerprinting, for example, to verify sample relationships\nbetween multiple omics data types, i.e. genomic, transcriptomic\nand epigenetic (DNA methylation).", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "6.0.1", "biocViews": "QualityControl, Genetics, Epigenetics, Transcriptomics,\nDNAMethylation, Transcription, GeneticVariability,\nImmunoOncology", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:47:00 UTC", "RemoteUrl": "https://github.com/bioc/omicsPrint", "RemoteRef": "HEAD", "RemoteSha": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:30:03 UTC", "User": "root" }, "Author": "Maarten van Iterson [aut],\nDavy Cats [cre]", "Maintainer": "Davy Cats ", "MD5sum": "636f7def84e89d843895095cdc3c6b64", "_user": "bioc", "_type": "src", "_file": "omicsPrint_1.33.0.tar.gz", "_fileid": "ce944d678e83758e3212488a3383045f501fdca624b320232cc701f7f32cb941", "_filesize": 4327855, "_sha256": "ce944d678e83758e3212488a3383045f501fdca624b320232cc701f7f32cb941", "_created": "2026-05-30T07:30:03.000Z", "_published": "2026-05-30T10:53:38.678Z", "_jobs": [ { "job": 78633638912, "time": 282, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7306514316" }, { "job": 78633638899, "time": 414, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7306528469" }, { "job": 78633638904, "time": 424, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7306529614" }, { "job": 78633638896, "time": 242, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7307621306" }, { "job": 78633638895, "time": 234, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7307620020" }, { "job": 78633300655, "time": 361, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306483286" }, { "job": 78633638901, "time": 381, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306525020" }, { "job": 78633638903, "time": 297, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7306516123" }, { "job": 78633638905, "time": 315, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7306518068" }, { "job": 78633638906, "time": 290, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7306515309" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/omicsPrint", "_commit": { "id": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380420 }, "_maintainer": { "name": "Davy Cats", "email": "davycats.dc@gmail.com", "login": "davycats", "description": "Bioinformation at @lumc-sasc. ", "uuid": 13235632 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "MASS", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "MultiAssayExperiment", "role": "Imports" }, { "package": "RaggedExperiment", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "GEOquery", "role": "Suggests" }, { "package": "VariantAnnotation", "role": "Suggests" }, { "package": "Rsamtools", "role": "Suggests" }, { "package": "BiocParallel", "role": "Suggests" }, { "package": "GenomicRanges", "role": "Suggests" }, { "package": "FDb.InfiniumMethylation.hg19", "role": "Suggests" }, { "package": "snpStats", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.33.0", "bioc": "3.24" }, { "branch": "release", "version": "1.32.0", "bioc": "3.23" } ], "_topics": [ "qualitycontrol", "genetics", "epigenetics", "transcriptomics", "dnamethylation", "transcription", "geneticvariability", "immunooncology" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 420, "source": "https://www.bioconductor.org/packages/stats/bioc/omicsPrint" }, "_mentions": 5, "_searchresults": 37, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/omicsPrint.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "alleleSharing", "beta2genotype", "inferRelations" ], "_datasets": [ { "name": "hg19.GoNLsnps", "title": "Dataframe with overlaps GoNL variants and 450K probes", "object": "hg19.GoNLsnps", "class": [ "DFrame" ], "fields": [], "table": false, "tojson": false }, { "name": "hm450.manifest.pop.GoNL", "title": "HM450 population-specific probe-masking recommendations", "object": "hm450.manifest.pop.GoNL", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "alleleSharing", "title": "allele sharing based on ibs", "topics": [ "alleleSharing" ] }, { "page": "beta2genotype", "title": "converts beta-values to genotypes (1, 2 and 3)", "topics": [ "beta2genotype" ] }, { "page": "hg19.GoNLsnps", "title": "Dataframe with overlaps GoNL variants and 450K probes", "topics": [ "hg19.GoNLsnps" ] }, { "page": "hm450.manifest.pop.GoNL", "title": "HM450 population-specific probe-masking recommendations", "topics": [ "hm450.manifest.pop.GoNL" ] }, { "page": "inferRelations", "title": "predict mismatches", "topics": [ "inferRelations" ] } ], "_readme": "https://github.com/bioc/omicsPrint/raw/HEAD/README.md", "_rundeps": [ "abind", "Biobase", "BiocBaseUtils", "BiocGenerics", "cli", "cpp11", "DelayedArray", "dplyr", "generics", "GenomicRanges", "glue", "IRanges", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "MultiAssayExperiment", "pillar", "pkgconfig", "purrr", "R6", "RaggedExperiment", "rlang", "S4Arrays", "S4Vectors", "Seqinfo", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector" ], "_vignettes": [ { "source": "omicsPrint.Rmd", "filename": "omicsPrint.html", "title": "omicsPrint: detection of data linkage errors in multiple omics studies", "author": "Maarten van Iterson, Davy Cats, Paul Hop, Bas T. Heijmans", "engine": "knitr::rmarkdown", "headings": [ "Within omics sample relationship verification", "Create toy data", "Running the allelesharing algorithm", "Report mismatches and provide graphical summary", "Across omics data type sample relationship verification", "An example using real world methylation data from a SummarizedExperiment", "SessionInfo", "Reference" ], "created": "2017-05-12 08:52:55", "modified": "2017-12-14 07:48:06", "commits": 29 } ], "_score": 5.267171728403014, "_indexed": true, "_nocasepkg": "omicsprint", "_universes": [ "bioc", "davycats" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.33.0", "date": "2026-05-30T07:35:10.000Z", "distro": "noble", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "92e01b511cdbdfc8b88b081e9dd84d8100a8a82ffa504ab3821fd1f0fcd45a34", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.6.0", "os": "linux", "version": "1.33.0", "date": "2026-05-30T07:35:32.000Z", "distro": "noble", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "a79d002efea9f3b1e9bf135102909e4c12695c890eadd6bb4049e774a5849916", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.5.3", "os": "mac", "version": "1.33.0", "date": "2026-05-30T10:45:24.000Z", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "4e07592181df74f11f96d18d9c3a451b5574c28f8f852e0bc26cd79c9bbdd41c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.6.0", "os": "mac", "version": "1.33.0", "date": "2026-05-30T10:45:25.000Z", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "2bdbe7c5e8d68a3ae7cbece275f0f80cf8828691b951b4b73168c88c1584842b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.6.0", "os": "wasm", "version": "1.33.0", "date": "2026-05-30T07:36:52.000Z", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "36ecf4b4b27e027fc938aa8ff60ce923194f5b05bccc9fd1fc9dcdd6c2804067", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.7.0", "os": "win", "version": "1.33.0", "date": "2026-05-30T07:33:20.000Z", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "91e693d947b427c968e5f55b4d05dde95b240aaa1839f8fef9354eed6177e5bb", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.5.3", "os": "win", "version": "1.33.0", "date": "2026-05-30T07:33:43.000Z", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "89113c08756d207a838378171dde703ecb52cfd03a44e25afb42d47748e97372", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" }, { "r": "4.6.0", "os": "win", "version": "1.33.0", "date": "2026-05-30T07:33:15.000Z", "commit": "16e6f98cad321d2fc80c8e7c4c8065bc0bcf1491", "fileid": "0cb07919aafb31dc767958fc8b055e9b35f9219d429a8adea23f97c9f3084931", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677996266" } ] }