Experiment and sample description | Salmon quantification | Sample information | Acknowledgments | Session info
Package: oct4 1.29.1
Michael Love
oct4: Conditional knockdown of OCT4 in mouse ESCs
This package provides the output of running Salmon on a set of 12 RNA-seq samples from King & Klose, "The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells", published in eLIFE, March 2017. For details on version numbers and how the samples were processed see the package vignette.
Authors:
oct4_1.29.1.tar.gz
oct4_1.29.1.tar.gz(r-4.7-any)oct4_1.29.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
oct4/json (API)
| # Install 'oct4' in R: |
| install.packages('oct4', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:oct4-1.29.1(data/experiment 3.24)oct4-1.28.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatasequencingdatarnaseqdatadatapkg
Last updated from:f7ef338a6d. Checks:1 ERROR, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 106 | ||
| linux-devel | OK | 131 | ||
| source / vignettes | OK | 136 | ||
| linux-release | OK | 172 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Salmon quantifications for condition OCT4 knockdown in mouse ESCs | oct4-package |
