Overview | Resource Description | Installation | Resource discovery via ExperimentHub | Importing Bariatric pre-processed data | Importing raw Bruker experiments | Caching and reproducibility | Package version | Session info
Package: nmrdata 1.3.0
Torben Kimhofer
nmrdata: Example 1d NMR Data for Metabolic Profiling
Provides example one-dimensional proton NMR spectra of murine urine samples collected before and after bariatric or sham surgery (Roux-en-Y gastric bypass). The data are adapted from Jia V Li et al. (2011), "Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk", Gut, 60(9), 1214–1223. <doi:10.1136/gut.2010.234708>. This package serves as example data for metabolomics analysis and teaching purposes.
Authors:
nmrdata_1.3.0.tar.gz
nmrdata_1.3.0.tar.gz(r-4.7-any)nmrdata_1.3.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nmrdata/json (API)
| # Install 'nmrdata' in R: |
| install.packages('nmrdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tkimhofer/nmrdata/issues
On BioConductor:nmrdata-1.3.0(data/experiment 3.24)nmrdata-1.2.0(data/experiment 3.23)
experimenthubexperimentdatadata-onlydatapkg
Last updated from:204a85d13b. Checks:1 NOTE, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 166 | ||
| linux-devel | OK | 202 | ||
| source / vignettes | OK | 448 | ||
| linux-release | OK | 189 |
Exports:getRawExpDir
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Unpack and return path to raw NMR experiment directory | getRawExpDir |