Installation | Citation | Getting help | Data description | Accessing study design and BigWig-Files | Importing into CAGEfightR | Session info
Package: nanotubes 1.29.0
Malte Thodberg
nanotubes: Mouse nanotube CAGE data
Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).
Authors:
nanotubes_1.29.0.tar.gz
nanotubes_1.29.0.tar.gz(r-4.7-any)nanotubes_1.29.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
nanotubes/json (API)
| # Install 'nanotubes' in R: |
| install.packages('nanotubes', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/maltethodberg/nanotubes/issues
Datasets:
- nanotubes - CAGE data from mouse nanotube experiment
On BioConductor:nanotubes-1.29.0(data/experiment 3.24)nanotubes-1.28.0(data/experiment 3.23)
experimentdatasequencingdataexpressiondatadatapkg
Last updated from:9a00e4fcc5. Checks:1 ERROR, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 153 | ||
| linux-devel | OK | 228 | ||
| source / vignettes | OK | 252 | ||
| linux-release | OK | 260 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| CAGE data from mouse nanotube experiment | nanotubes |