Package: mygene 1.43.0

Adam Mark, Cyrus Afrasiabi, Chunlei Wu

mygene: Access MyGene.Info_ services

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

Authors:Adam Mark, Ryan Thompson, Cyrus Afrasiabi, Chunlei Wu

mygene_1.43.0.tar.gz
mygene_1.43.0.zip(r-4.5)mygene_1.43.0.zip(r-4.4)mygene_1.43.0.zip(r-4.3)
mygene_1.43.0.tgz(r-4.4-any)mygene_1.43.0.tgz(r-4.3-any)
mygene_1.43.0.tar.gz(r-4.5-noble)mygene_1.43.0.tar.gz(r-4.4-noble)
mygene_1.43.0.tgz(r-4.4-emscripten)mygene_1.43.0.tgz(r-4.3-emscripten)
mygene.pdf |mygene.html✨
mygene/json (API)

# Install 'mygene' in R:

install.packages('mygene', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:mygene-1.41.0(bioc 3.20)mygene-1.40.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

annotation

7.16 score 1 packages 318 scripts 548 downloads 19 mentions 7 exports 139 dependencies

Last updated 23 days agofrom:66cce1e063. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	OK	Oct 31 2024
R-4.5-linux	OK	Oct 30 2024
R-4.4-win	OK	Oct 31 2024
R-4.4-mac	OK	Oct 31 2024
R-4.3-win	OK	Oct 31 2024
R-4.3-mac	OK	Oct 31 2024

Exports:getGene getGenes makeTxDbFromMyGene metadata MyGene query queryMany

Dependencies:abind AnnotationDbi askpass backports base64enc BH Biobase BiocFileCache BiocGenerics BiocIO BiocParallel biomaRt Biostrings bit bit64 bitops blob bslib cachem checkmate chron cli cluster codetools colorspace cpp11 crayon curl data.table DBI dbplyr DelayedArray digest dplyr evaluate fansi farver fastmap filelock fontawesome foreign formatR Formula fs futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 glue gridExtra gsubfn gtable highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 IRanges isoband jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime munsell nlme nnet openssl pillar pkgconfig plogr plyr png prettyunits progress proto purrr R6 rappdirs RColorBrewer Rcpp RCurl restfulr Rhtslib rjson rlang rmarkdown rpart Rsamtools RSQLite rstudioapi rtracklayer S4Arrays S4Vectors sass scales snow SparseArray sqldf stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex txdbmaker UCSC.utils utf8 vctrs viridis viridisLite withr xfun XML xml2 XVector yaml zlibbioc

Using mygene.R

Rendered frommygene.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2018-06-13
Started: 2014-08-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Return the gene object for the given geneid.	getGene getGene,missing-method getGene,MyGene-method
Return the list of gene objects for the given list of geneids.	getGenes getGenes,missing-method getGenes,MyGene-method
makeTxDbFromMyGene	makeTxDbFromMyGene
metadata	metadata metadata,MyGene-method
Access MyGene.info annotation services	mygene
MyGene	MyGene
Class '"MyGene"'	MyGene-class
Return the query result.	query query,missing-method query,MyGene-method
Return the batch query result.	queryMany queryMany,missing-method queryMany,MyGene-method