Package: mygene 1.49.0

Adam Mark, Cyrus Afrasiabi, Chunlei Wu

mygene: Access MyGene.Info_ services

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

Authors:Adam Mark, Ryan Thompson, Cyrus Afrasiabi, Chunlei Wu

mygene_1.49.0.tar.gz
mygene_1.49.0.zip(r-4.7)mygene_1.49.0.zip(r-4.6)mygene_1.49.0.zip(r-4.5)
mygene_1.49.0.tgz(r-4.6-any)mygene_1.49.0.tgz(r-4.5-any)
mygene_1.49.0.tar.gz(r-4.7-any)mygene_1.49.0.tar.gz(r-4.6-any)
mygene_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
mygene/json (API)

# Install 'mygene' in R:

install.packages('mygene', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:mygene-1.49.0(bioc 3.24)mygene-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

annotation

7.31 score 2 packages 344 scripts 19 mentions 7 exports 134 dependencies

Last updated from:635ef931d5. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	257
linux-devel-x86_64	OK	424
source / vignettes	OK	335
linux-release-x86_64	OK	388
macos-release-arm64	OK	298
macos-oldrel-arm64	OK	250
windows-devel	OK	295
windows-release	OK	303
windows-oldrel	OK	316
wasm-release	OK	206

Exports:getGene getGenes makeTxDbFromMyGene metadata MyGene query queryMany

Dependencies:abind AnnotationDbi askpass backports base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocParallel biomaRt Biostrings bit bit64 bitops blob bslib cachem checkmate chron cigarillo cli cluster codetools colorspace cpp11 crayon curl data.table DBI dbplyr DelayedArray digest dplyr evaluate farver fastmap filelock fontawesome foreign formatR Formula fs futile.logger futile.options generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 glue gridExtra gsubfn gtable highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 IRanges isoband jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime nnet openssl pillar pkgconfig plyr png prettyunits progress proto purrr R6 rappdirs RColorBrewer Rcpp RCurl restfulr Rhtslib rjson rlang rmarkdown rpart Rsamtools RSQLite rstudioapi rtracklayer S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray sqldf stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex txdbmaker UCSC.utils utf8 vctrs viridisLite withr xfun XML xml2 XVector yaml

Using mygene.R

Rendered frommygene.Rnwusingutils::Sweave

Last update: 2018-06-13
Started: 2014-08-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Return the gene object for the given geneid.	getGene getGene,missing-method getGene,MyGene-method
Return the list of gene objects for the given list of geneids.	getGenes getGenes,missing-method getGenes,MyGene-method
makeTxDbFromMyGene	makeTxDbFromMyGene
metadata	metadata metadata,MyGene-method
Access MyGene.info annotation services	mygene
MyGene	MyGene
Class '"MyGene"'	MyGene-class
Return the query result.	query query,missing-method query,MyGene-method
Return the batch query result.	queryMany queryMany,missing-method queryMany,MyGene-method