{
  "_id": "6adb12812ccc51e6c64e5a78",
  "Package": "mygene",
  "Type": "Package",
  "Title": "Access MyGene.Info_ services",
  "Version": "1.49.0",
  "Date": "2024-03-19",
  "Author": "Adam Mark, Ryan Thompson, Cyrus Afrasiabi, Chunlei Wu",
  "Maintainer": "Adam Mark, Cyrus Afrasiabi, Chunlei Wu <cwu@scripps.edu>",
  "Description": "MyGene.Info_ provides simple-to-use REST web services to\nquery/retrieve gene annotation data. It's designed with\nsimplicity and performance emphasized. *mygene*, is an\neasy-to-use R wrapper to access MyGene.Info_ services.",
  "License": "Artistic-2.0",
  "biocViews": "Annotation",
  "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils\nzlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:40:13 UTC",
  "RemoteUrl": "https://github.com/bioc/mygene",
  "RemoteRef": "HEAD",
  "RemoteSha": "635ef931d59e338ce25067c7f7e35a78862103dc",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-23 07:46:15 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "mygene_1.49.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/df51af4f74afb7d1066575f9fcc3a0c31da6383196d77fa40086e4c173fbdacf",
  "_filesize": 290163,
  "_sha256": "df51af4f74afb7d1066575f9fcc3a0c31da6383196d77fa40086e4c173fbdacf",
  "_expires": "2027-01-31T07:53:35.000Z",
  "_created": "2026-10-23T07:46:15.000Z",
  "_published": "2026-10-23T07:53:37.641Z",
  "_upstream": "https://github.com/bioc/mygene",
  "_status": "success",
  "_maintainer": {
    "name": "Adam Mark, Cyrus Afrasiabi, Chunlei Wu",
    "email": "cwu@scripps.edu",
    "login": "newgene",
    "description": "",
    "uuid": 130158
  },
  "_jobs": [
    {
      "job": 120302938597,
      "time": 171,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12486069091"
    },
    {
      "job": 120302938688,
      "time": 384,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12486237683"
    },
    {
      "job": 120302938702,
      "time": 347,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12486642358"
    },
    {
      "job": 120302938685,
      "time": 222,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12485834155"
    },
    {
      "job": 120302938775,
      "time": 235,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12485898672"
    },
    {
      "job": 120300874796,
      "time": 331,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12486183108"
    },
    {
      "job": 120302938609,
      "time": 135,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12486646969"
    },
    {
      "job": 120302938786,
      "time": 230,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12485784265"
    },
    {
      "job": 120302938714,
      "time": 232,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12487047683"
    },
    {
      "job": 120302938928,
      "time": 232,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12486208667"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 11
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469",
  "_commit": {
    "id": "635ef931d59e338ce25067c7f7e35a78862103dc",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380013
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.1",
      "role": "Depends"
    },
    {
      "package": "GenomicFeatures",
      "role": "Depends"
    },
    {
      "package": "txdbmaker",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "httr",
      "version": ">= 0.3",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "version": ">= 0.9.7",
      "role": "Imports"
    },
    {
      "package": "Hmisc",
      "role": "Imports"
    },
    {
      "package": "sqldf",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.49.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.48.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "annotation"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 479,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 934,
    "source": "https://www.bioconductor.org/packages/stats/bioc/mygene"
  },
  "_mentions": 19,
  "_searchresults": 345,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/mygene.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "getGene",
    "getGenes",
    "makeTxDbFromMyGene",
    "metadata",
    "MyGene",
    "query",
    "queryMany"
  ],
  "_help": [
    {
      "page": "getGene",
      "title": "Return the gene object for the given geneid.",
      "topics": [
        "getGene",
        "getGene,missing-method",
        "getGene,MyGene-method"
      ]
    },
    {
      "page": "getGenes",
      "title": "Return the list of gene objects for the given list of geneids.",
      "topics": [
        "getGenes",
        "getGenes,missing-method",
        "getGenes,MyGene-method"
      ]
    },
    {
      "page": "makeTxDbFromMyGene",
      "title": "makeTxDbFromMyGene",
      "topics": [
        "makeTxDbFromMyGene"
      ]
    },
    {
      "page": "metadata",
      "title": "metadata",
      "topics": [
        "metadata",
        "metadata,MyGene-method"
      ]
    },
    {
      "page": "mygene-package",
      "title": "Access MyGene.info annotation services",
      "topics": [
        "mygene"
      ]
    },
    {
      "page": "MyGene",
      "title": "MyGene",
      "topics": [
        "MyGene"
      ]
    },
    {
      "page": "MyGene-class",
      "title": "Class '\"MyGene\"'",
      "topics": [
        "MyGene-class"
      ]
    },
    {
      "page": "query",
      "title": "Return the query result.",
      "topics": [
        "query",
        "query,missing-method",
        "query,MyGene-method"
      ]
    },
    {
      "page": "queryMany",
      "title": "Return the batch query result.",
      "topics": [
        "queryMany",
        "queryMany,missing-method",
        "queryMany,MyGene-method"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/mygene/raw/HEAD/README.md",
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocIO",
    "BiocParallel",
    "biomaRt",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "bslib",
    "cachem",
    "checkmate",
    "chron",
    "cigarillo",
    "cli",
    "cluster",
    "codetools",
    "colorspace",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "filelock",
    "fontawesome",
    "foreign",
    "formatR",
    "Formula",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomeInfoDb",
    "GenomicAlignments",
    "GenomicFeatures",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "gridExtra",
    "gsubfn",
    "gtable",
    "highr",
    "Hmisc",
    "hms",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "IRanges",
    "isoband",
    "jquerylib",
    "jsonlite",
    "KEGGREST",
    "knitr",
    "labeling",
    "lambda.r",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "nnet",
    "openssl",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "prettyunits",
    "progress",
    "proto",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RCurl",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "rmarkdown",
    "rpart",
    "Rsamtools",
    "RSQLite",
    "rstudioapi",
    "rtracklayer",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "snow",
    "sqldf",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "txdbmaker",
    "UCSC.utils",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XML",
    "xml2",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "mygene.Rnw",
      "filename": "mygene.pdf",
      "title": "Using mygene.R",
      "engine": "utils::Sweave",
      "headings": [
        "1 Overview",
        "2 Gene Annotation Service",
        "3 Gene Query Service",
        "4 makeTxDbFromMyGene",
        "5 Tutorial, ID mapping",
        "6 References"
      ],
      "created": "2014-08-01 03:14:42",
      "modified": "2018-06-13 19:11:13",
      "commits": 11
    }
  ],
  "_score": 7.315970345456918,
  "_indexed": true,
  "_nocasepkg": "mygene",
  "_universes": [
    "bioc",
    "newgene"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.49.0",
      "date": "2026-10-23T07:50:39.000Z",
      "distro": "resolute",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/562a27a4db1e99e321dc15de8a58fd40a987c9cd60eb1a20ff16c54a201982ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.49.0",
      "date": "2026-10-23T07:50:34.000Z",
      "distro": "resolute",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/071e1c0352550ad99c9ef882ab184ed29527ad5135a07b5a6b0c73c35f965fde",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.49.0",
      "date": "2026-10-23T07:48:30.000Z",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/94e862964590d817248e4c1aa9a0b8f8f497b336a54e36f228a744c8e316722e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.49.0",
      "date": "2026-10-23T07:48:32.000Z",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/61261a0fd82e566807e51711c0fbba09116e232c1e89bb7a241c98e465201fca",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.49.0",
      "date": "2026-10-23T07:49:03.000Z",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/1e700fc7fc5b837d221eb31bfbc39a3eb74a18edc6767af3ed8ebe5ed40617d8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.49.0",
      "date": "2026-10-23T07:48:13.000Z",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/b42ca61831498b649b026eaba7c4c93497ee43ea781ce0ad588a5b667d536f21",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.49.0",
      "date": "2026-10-23T07:48:16.000Z",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/56456ab1f48cd722e0fd67a00c10454d42de0168227bfe68814405f891a475df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.49.0",
      "date": "2026-10-23T07:48:09.000Z",
      "commit": "635ef931d59e338ce25067c7f7e35a78862103dc",
      "fileid": "https://r2.ropensci.org/ef1fc364cd90a9376853cf0990e2da8b0d4f1e3d6fe3c058c4a2e51ea5720c90",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39919404469"
    }
  ]
}