Package: muscle 3.49.0

Alex T. Kalinka

muscle: Multiple Sequence Alignment with MUSCLE

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Authors:Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

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muscle.pdf |muscle.html✨
muscle/json (API)
NEWS

# Install 'muscle' in R:
install.packages('muscle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • umax - Unaligned MAX sequences

On BioConductor:muscle-3.49.0(bioc 3.21)muscle-3.48.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multiplesequencealignmentalignmentsequencinggeneticssequencematchingdataimportcpp

5.21 score 81 scripts 564 downloads 166 mentions 2 exports 19 dependencies

Last updated 2 months agofrom:25320f42b5. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-win-x86_64WARNINGOct 31 2024
R-4.5-linux-x86_64WARNINGOct 30 2024
R-4.4-win-x86_64WARNINGDec 19 2024
R-4.4-mac-x86_64WARNINGDec 19 2024
R-4.4-mac-aarch64WARNINGDec 19 2024
R-4.3-win-x86_64WARNINGDec 19 2024
R-4.3-mac-x86_64WARNINGDec 19 2024
R-4.3-mac-aarch64WARNINGDec 19 2024

Exports:.muscleRmuscle

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6S4VectorssysUCSC.utilsXVectorzlibbioc

A guide to using muscle

Rendered frommuscle-vignette.Rnwusingutils::Sweaveon Dec 19 2024.

Last update: 2015-03-07
Started: 2015-03-07