Package: muscle 3.47.0

Alex T. Kalinka

muscle: Multiple Sequence Alignment with MUSCLE

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Authors:Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

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NEWS

# Install 'muscle' in R:
install.packages('muscle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • umax - Unaligned MAX sequences

On BioConductor:muscle-3.47.0(bioc 3.20)muscle-3.46.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

2 exports 0.82 score 18 dependencies 166 mentions 40 downloads

Last updated 2 months agofrom:c4013fb0af

Exports:.muscleRmuscle

Dependencies:askpassBiocGenericsBiostringscrayoncurlGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6S4VectorssysUCSC.utilsXVectorzlibbioc

A guide to using muscle

Rendered frommuscle-vignette.Rnwusingutils::Sweaveon Jun 30 2024.

Last update: 2015-03-07
Started: 2015-03-07