Package: muscle 3.55.0

Alex T. Kalinka

muscle: Multiple Sequence Alignment with MUSCLE

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Authors:Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

muscle_3.55.0.tar.gz
muscle_3.55.0.zip(r-4.7)muscle_3.55.0.zip(r-4.6)muscle_3.55.0.zip(r-4.5)
muscle_3.55.0.tgz(r-4.6-x86_64)muscle_3.55.0.tgz(r-4.6-arm64)muscle_3.55.0.tgz(r-4.5-x86_64)muscle_3.55.0.tgz(r-4.5-arm64)
muscle_3.55.0.tar.gz(r-4.7-arm64)muscle_3.55.0.tar.gz(r-4.7-x86_64)muscle_3.55.0.tar.gz(r-4.6-arm64)muscle_3.55.0.tar.gz(r-4.6-x86_64)
muscle_3.55.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
muscle/json (API)

# Install 'muscle' in R:
install.packages('muscle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • umax - Unaligned MAX sequences

On BioConductor:muscle-3.55.0(bioc 3.24)muscle-3.54.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multiplesequencealignmentalignmentsequencinggeneticssequencematchingdataimportcpp

4.33 score 108 scripts 166 mentions 2 exports 8 dependencies

Last updated from:2446ca4ab6. Checks:13 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR165
linux-devel-arm64ERROR226
linux-devel-x86_64ERROR198
source / vignettesERROR243
linux-release-arm64ERROR189
linux-release-x86_64ERROR188
macos-release-arm64ERROR142
macos-release-x86_64ERROR296
macos-oldrel-arm64ERROR116
macos-oldrel-x86_64ERROR287
windows-develERROR208
windows-releaseERROR206
windows-oldrelERROR198
wasm-releaseOK147

Exports:.muscleRmuscle

Dependencies:BiocGenericsBiostringscrayongenericsIRangesS4VectorsSeqinfoXVector