Package: muscle 3.55.0

Alex T. Kalinka

muscle: Multiple Sequence Alignment with MUSCLE

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Authors:Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

muscle_3.55.0.tar.gz
muscle_3.55.0.zip(r-4.7-x86_64)muscle_3.55.0.zip(r-4.7-arm64)muscle_3.55.0.zip(r-4.6-x86_64)muscle_3.55.0.zip(r-4.6-arm64)muscle_3.55.0.zip(r-4.5-x86_64)
muscle_3.55.0.tgz(r-4.6-x86_64)muscle_3.55.0.tgz(r-4.6-arm64)muscle_3.55.0.tgz(r-4.5-x86_64)muscle_3.55.0.tgz(r-4.5-arm64)
muscle_3.55.0.tar.gz(r-4.7-arm64)muscle_3.55.0.tar.gz(r-4.7-x86_64)muscle_3.55.0.tar.gz(r-4.6-arm64)muscle_3.55.0.tar.gz(r-4.6-x86_64)
muscle_3.55.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
muscle/json (API)

# Install 'muscle' in R:
install.packages('muscle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • umax - Unaligned MAX sequences

On BioConductor:muscle-3.55.0(bioc 3.24)muscle-3.54.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multiplesequencealignmentalignmentsequencinggeneticssequencematchingdataimportcpp

4.32 score 105 scripts 970 downloads 166 mentions 2 exports 8 dependencies

Last updated from:2446ca4ab6. Checks:15 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR145
linux-devel-arm64ERROR135
linux-devel-x86_64ERROR232
source / vignettesERROR268
linux-release-arm64ERROR146
linux-release-x86_64ERROR247
macos-release-arm64ERROR128
macos-release-x86_64ERROR242
macos-oldrel-arm64ERROR108
macos-oldrel-x86_64ERROR252
windows-devel-arm64ERROR352
windows-devel-x86_64ERROR178
windows-release-arm64ERROR331
windows-release-x86_64ERROR149
windows-oldrel-x86_64ERROR196
wasm-releaseOK125

Exports:.muscleRmuscle

Dependencies:BiocGenericsBiostringscrayongenericsIRangesS4VectorsSeqinfoXVector