Package: mosdef 1.1.0
mosdef: MOSt frequently used and useful Differential Expression Functions
This package provides functionality to run a number of tasks in the differential expression analysis workflow. This encompasses the most widely used steps, from running various enrichment analysis tools with a unified interface to creating plots and beautifying table components linking to external websites and databases. This streamlines the generation of comprehensive analysis reports.
Authors:
mosdef_1.1.0.tar.gz
mosdef_1.1.0.zip(r-4.5)mosdef_1.1.0.zip(r-4.4)mosdef_1.1.0.zip(r-4.3)
mosdef_1.1.0.tgz(r-4.4-any)mosdef_1.1.0.tgz(r-4.3-any)
mosdef_1.1.0.tar.gz(r-4.5-noble)mosdef_1.1.0.tar.gz(r-4.4-noble)
mosdef_1.1.0.tgz(r-4.4-emscripten)mosdef_1.1.0.tgz(r-4.3-emscripten)
mosdef.pdf |mosdef.html✨
mosdef/json (API)
NEWS
# Install 'mosdef' in R: |
install.packages('mosdef', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/imbeimainz/mosdef/issues
- res_enrich_macrophage_cluPro - A sample enrichment object
- res_enrich_macrophage_goseq - A sample enrichment object
- res_enrich_macrophage_topGO - A sample enrichment object
- res_macrophage_IFNg_vs_naive - A sample 'DESeqResults' object
On BioConductor:mosdef-1.1.0(bioc 3.20)mosdef-1.0.0(bioc 3.19)
Last updated 2 months agofrom:33678acc43
Exports:buttonifiercreate_link_dbPTMcreate_link_ENSEMBLcreate_link_GeneCardscreate_link_GOcreate_link_GTEXcreate_link_HPAcreate_link_NCBIcreate_link_PubMedcreate_link_UniProtde_table_painterde_volcanoderesult_to_dfgene_plotgeneinfo_to_htmlget_expr_valuesgo_to_htmlgo_volcanomap_to_colormosdef_de_container_checkmosdef_res_checkplot_marun_cluProrun_goseqrun_topGOstyleColorBar_divergent
Dependencies:abindAnnotationDbiapeaplotaskpassbase64encBHBiasedUrnBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobbslibcachemcliclusterProfilercodetoolscolorspacecowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArrayDESeq2digestDOSEdownloaderdplyrDTenrichplotevaluatefansifarverfastmapfastmatchfgseafilelockfontawesomeformatRfsfutile.loggerfutile.optionsgeneLenDataBasegenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggforceggfunggnewscaleggplot2ggplotifyggraphggrepelggtreeglueGO.dbGOSemSimgoseqgraphgraphlayoutsgridExtragridGraphicsgsongtableHDO.dbhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplogrplyrpngpolyclipprettyunitsprogresspromisespurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalesscatterpieshadowtextsnowSparseArraySparseMstringistringrSummarizedExperimentsyssystemfontstibbletidygraphtidyrtidyselecttidytreetinytextopGOtreeiotweenrtxdbmakerUCSC.utilsutf8vctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlyulab.utilszlibbioc