Package: minfiDataEPIC 1.39.0

Kasper Daniel Hansen

minfiDataEPIC: Example data for the Illumina Methylation EPIC array

Data from 3 technical replicates of the cell line GM12878 from the EPIC methylation array.

Authors:Jean-Philippe Fortin, Kasper Daniel Hansen

minfiDataEPIC_1.39.0.tar.gz
minfiDataEPIC_1.39.0.tar.gz(r-4.7-any)minfiDataEPIC_1.39.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
minfiDataEPIC/json (API)

# Install 'minfiDataEPIC' in R:
install.packages('minfiDataEPIC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • MsetEPIC - An example dataset for Illumina's Human Methylation EPIC dataset, after preprocessing.
  • RGsetEPIC - An example dataset for the Illumina's Human Methylation EPIC platform.

On BioConductor:minfiDataEPIC-1.39.0(data/experiment 3.24)minfiDataEPIC-1.38.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

homo_sapiens_datamethylationarraydatamicroarraydatadatapkg

2.72 score 26 scripts 0 exports 137 dependencies

Last updated from:35f2e758be. Checks:1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
source / vignettesOK-3031

Exports:

Dependencies:abindannotateAnnotationDbiaskpassbase64beanplotBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryglueh5mreadHDF5Arrayhmshttrhttr2IlluminaHumanMethylationEPICanno.ilm10b2.hg19IlluminaHumanMethylationEPICmanifestilluminaioIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscrimeSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbutf8vctrsvroomwithrXMLxml2xtableXVectoryaml