Package: microbiomeDASim 1.27.0

Justin Williams

microbiomeDASim: Microbiome Differential Abundance Simulation

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

Authors:Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson

microbiomeDASim_1.27.0.tar.gz
microbiomeDASim_1.27.0.zip(r-4.7)microbiomeDASim_1.27.0.zip(r-4.6)microbiomeDASim_1.27.0.zip(r-4.5)
microbiomeDASim_1.27.0.tgz(r-4.6-any)microbiomeDASim_1.27.0.tgz(r-4.5-any)
microbiomeDASim_1.27.0.tar.gz(r-4.7-any)microbiomeDASim_1.27.0.tar.gz(r-4.6-any)
microbiomeDASim_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
microbiomeDASim/json (API)
NEWS

# Install 'microbiomeDASim' in R:
install.packages('microbiomeDASim', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/williazo/microbiomedasim/issues

On BioConductor:microbiomeDASim-1.27.0(bioc 3.24)microbiomeDASim-1.26.0(bioc 3.23)

microbiomevisualizationsoftware

4.48 score 3 stars 2 scripts 316 downloads 1 mentions 9 exports 77 dependencies

Last updated from:aefd984661. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR188
linux-devel-x86_64NOTE396
source / vignettesOK277
linux-release-x86_64NOTE303
macos-release-arm64NOTE225
macos-oldrel-arm64NOTE204
windows-develNOTE273
windows-releaseNOTE227
windows-oldrelNOTE230
wasm-releaseOK142

Exports:gen_norm_microbiomegen_norm_microbiome_obsggplot_spaghettimean_trendmvrnorm_corr_genmvrnorm_simmvrnorm_sim_obssimulate2MRexperimentsimulate2phyloseq

Dependencies:ade4apeBiobaseBiocGenericsbiomformatBiostringsbitopscaToolscliclustercodetoolscpp11crayondata.tabledigestfarverforeachgenericsggplot2glmnetgluegmmgplotsgtablegtoolsigraphIRangesisobanditeratorsjsonliteKernSmoothlabelinglatticelifecyclelimmalocfitmagrittrMASSMatrixmatrixStatsmetagenomeSeqmgcvmulttestmvtnormnlmepbapplypermutephyloseqpixmappkgconfigplyrR6RColorBrewerRcppRcppArmadilloRcppEigenreshape2rlangS4VectorsS7sandwichscalesSeqinfoshapespstatmodstringistringrsurvivaltmvtnormvctrsveganviridisLitewithrWrenchXVectorzoo

microbiomeDASim

Rendered frommicrobiomeDASim.Rnwusingknitr::knitron Jun 12 2026.

Last update: 2020-01-15
Started: 2019-08-26