Package: miaSim 1.11.0
miaSim: Microbiome Data Simulation
Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.
Authors:
miaSim_1.11.0.tar.gz
miaSim_1.11.0.zip(r-4.5)miaSim_1.11.0.zip(r-4.4)miaSim_1.11.0.zip(r-4.3)
miaSim_1.11.0.tgz(r-4.4-any)miaSim_1.11.0.tgz(r-4.3-any)
miaSim_1.11.0.tar.gz(r-4.5-noble)miaSim_1.11.0.tar.gz(r-4.4-noble)
miaSim_1.11.0.tgz(r-4.4-emscripten)miaSim_1.11.0.tgz(r-4.3-emscripten)
miaSim.pdf |miaSim.html✨
miaSim/json (API)
NEWS
# Install 'miaSim' in R: |
install.packages('miaSim', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/microbiome/miasim/issues
On BioConductor:miaSim-1.11.0(bioc 3.20)miaSim-1.10.0(bioc 3.19)
Last updated 2 months agofrom:20f6cb7427
Exports:.estimateAFromSimulations.eventTimes.rdirichlet.simulationTimespowerlawArandomArandomEsimulateConsumerResourcesimulateGLVsimulateHubbellsimulateHubbellRatessimulateRickersimulateSOIsimulateStochasticLogistic
Dependencies:abindapeaskpassBHBiobaseBiocGenericsBiocParallelBiostringscachemclicodetoolscpp11crayoncurlDelayedArraydeSolvedigestdplyrfansifastmapformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimenlmeopensslpillarpkgconfigpoweRlawpracmapurrrR6RcpprlangS4ArraysS4VectorsSingleCellExperimentsnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttidytreetreeioTreeSummarizedExperimentUCSC.utilsutf8vctrswithrXVectoryulab.utilszlibbioc