# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "miaSim" in publications use:'
type: software
license: Artistic-2.0
title: 'miaSim: Microbiome Data Simulation'
version: 1.11.0
doi: 10.1111/2041-210X.14129
identifiers:
- type: doi
  value: 10.32614/CRAN.package.miaSim
abstract: Microbiome time series simulation with generalized Lotka-Volterra model,
  Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used
  to determine the abundance matrix. The resulting abundance matrix is applied to
  (Tree)SummarizedExperiment objects.
authors:
- family-names: Simsek
  given-names: Yagmur
  email: yagmur.simsek.98@gmail.com
- family-names: Faust
  given-names: Karoline
  email: karoline.faust@kuleuven.be
- family-names: Gao
  given-names: Yu
  email: gaoyu19920914@gmail.com
- family-names: Gheysen
  given-names: Emma
  email: emma.gheysen@student.kuleuven.be
- family-names: Garza
  given-names: Daniel Rios
  email: danielrios.garza@kuleuven.be
- family-names: Borman
  given-names: Tuomas
  email: tuomas.v.borman@utu.fi
  orcid: https://orcid.org/0000-0002-8563-8884
- family-names: Lahti
  given-names: Leo
  email: leo.lahti@iki.fi
  orcid: https://orcid.org/0000-0001-5537-637X
preferred-citation:
  type: article
  title: 'miaSim: an R/Bioconductor package to easily simulate microbial community
    dynamics'
  authors:
  - family-names: Gao
    given-names: Yu
    email: gaoyu19920914@gmail.com
  - family-names: Şimşek
    given-names: Yağmur
    email: Yagmur.Simsek@hsrw.org
  - family-names: Gheysen
    given-names: Emma
    email: emma.gheysen@student.kuleuven.be
  - family-names: Borman
    given-names: Tuomas
    email: tuomas.v.borman@utu.fi
    orcid: https://orcid.org/0000-0002-8563-8884
  - family-names: Li
    given-names: Yi
  - family-names: Lahti
    given-names: Leo
    email: leo.lahti@iki.fi
    orcid: https://orcid.org/0000-0001-5537-637X
  - family-names: Faust
    given-names: Karoline
    email: karoline.faust@kuleuven.be
  - family-names: Garza
    given-names: Daniel
  journal: Methods in Ecology and Evolution
  year: '2023'
  doi: 10.1111/2041-210X.14129
  notes: Version 1.11.0
repository: https://bioc.r-universe.dev
repository-code: https://github.com/microbiome/miaSim
commit: 20f6cb7427a16572316d2883e3e04e52c07a2251
url: https://github.com/microbiome/miaSim
contact:
- family-names: Simsek
  given-names: Yagmur
  email: yagmur.simsek.98@gmail.com