Package: miaDash 1.5.1

Giulio Benedetti

miaDash: Dashboard for the interactive analysis and exploration of microbiome data

miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.

Authors:Giulio Benedetti [aut, cre], Akewak Jeba [ctb], Leo Lahti [aut]

miaDash_1.5.1.tar.gz
miaDash_1.5.1.zip(r-4.7)miaDash_1.5.1.zip(r-4.6)miaDash_1.5.1.zip(r-4.5)
miaDash_1.5.1.tgz(r-4.6-any)miaDash_1.5.1.tgz(r-4.5-any)
miaDash_1.5.1.tar.gz(r-4.7-any)miaDash_1.5.1.tar.gz(r-4.6-any)
miaDash_1.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
miaDash/json (API)

# Install 'miaDash' in R:

install.packages('miaDash', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/microbiome/miadash/issues

On BioConductor:miaDash-1.5.1(bioc 3.24)miaDash-1.4.0(bioc 3.23)

microbiome software visualization gui shinyapps dataimport bioinformatics dashboard isee mia shiny visualisation webapp

4.78 score 1 stars 9 scripts 252 downloads 1 exports 217 dependencies

Last updated from:27b79e157e. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
bioc-checks	NOTE	257
linux-devel-x86_64	NOTE	458
source / vignettes	OK	353
linux-release-x86_64	NOTE	527
macos-release-arm64	NOTE	425
macos-oldrel-arm64	NOTE	263
windows-devel	NOTE	300
windows-release	NOTE	379
windows-oldrel	NOTE	313
wasm-release	OK	210

Exports:miaDash

Dependencies:abind ape aplot assorthead base64enc beachmat beeswarm BH Biobase BiocBaseUtils BiocGenerics BiocNeighbors BiocParallel BiocSingular Biostrings bit bit64 bluster bslib cachem Cairo cellranger circlize cli clipr clue cluster codetools colorspace colourpicker commonmark ComplexHeatmap cpp11 crayon crosstalk curl DBI DECIPHER decontam DelayedArray DelayedMatrixStats digest DirichletMultinomial doParallel dplyr dqrng DT ecodive emmeans estimability evaluate farver fastmap fillpattern FNN fontawesome fontBitstreamVera fontLiberation fontquiver foreach formatR fs futile.logger futile.options gdtools generics GenomicRanges GetoptLong ggbeeswarm ggforce ggfun ggiraph ggnewscale ggplot2 ggplotify ggraph ggrastr ggrepel ggtext ggtree GlobalOptions glue graphlayouts gridExtra gridGraphics gridtext gtable highr hms htmltools htmlwidgets httpuv igraph IRanges irlba iSEE iSEEtree isoband iterators janeaustenr jpeg jquerylib jsonlite knitr labeling lambda.r later lattice lazyeval lifecycle listviewer litedown magrittr markdown MASS Matrix MatrixGenerics matrixStats memoise mgcv mia miaViz mime miniUI MultiAssayExperiment mvtnorm nlme numDeriv otel patchwork permute pheatmap pillar pkgconfig plyr png polyclip prettyunits progress promises purrr R6 ragg rappdirs rbiom RColorBrewer Rcpp RcppAnnoy RcppArmadillo RcppEigen RcppML RcppProgress readr readxl rematch reshape2 rintrojs rjson rlang rmarkdown RSpectra rsvd Rtsne S4Arrays S4Vectors S7 sass ScaledMatrix scales scater scuttle Seqinfo shape shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment sitmo snow SnowballC sourcetools SparseArray sparseMatrixStats stringi stringr SummarizedExperiment systemfonts textshaping tibble tidygraph tidyr tidyselect tidytext tidytree tinytex tokenizers treeio TreeSummarizedExperiment tweenr tzdb utf8 uwot vctrs vegan vipor viridis viridisLite vroom withr xfun xml2 xtable XVector yaml yulab.utils

Introduction | Motivation | Interface | Tutorial | Installation | Example | Resources | Citation | Background Knowledge | Help | Reproducibility | References

Rendered frommiaDash.Rmdusingknitr::rmarkdown

Last update: 2025-03-21
Started: 2024-10-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
miaDash	miaDash

Usage by other packages (reverse dependencies)