Package: methylMnM 1.45.0

Yan Zhou

methylMnM: detect different methylation level (DMR)

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Authors:Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

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methylMnM.pdf |methylMnM.html✨
methylMnM/json (API)

# Install 'methylMnM' in R:
install.packages('methylMnM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:methylMnM-1.43.0(bioc 3.20)methylMnM-1.42.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarednamethylationsequencing

4.38 score 1 packages 2 scripts 208 downloads 4 mentions 18 exports 5 dependencies

Last updated 24 days agofrom:ed89f517ec. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-win-x86_64NOTEOct 30 2024
R-4.5-linux-x86_64NOTEOct 30 2024
R-4.4-win-x86_64NOTEOct 30 2024
R-4.4-mac-x86_64NOTEOct 30 2024
R-4.4-mac-aarch64NOTEOct 30 2024
R-4.3-win-x86_64NOTEOct 30 2024
R-4.3-mac-x86_64NOTEOct 30 2024
R-4.3-mac-aarch64NOTEOct 30 2024

Exports:calcFactornewcalculatecountcalculatecount1calculatecountnegCNVnormalcountcpgbincountMeDIPbincountMREbincountMREcpgbincpgcountMnM.qvalueMnM.selectDMRMnM.testnormpdfnormpdft1pmultinomqvalue.rankremoveblacklist

Dependencies:edgeRlatticelimmalocfitstatmod

methylMnM

Rendered frommethylMnM.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2018-08-30
Started: 2013-11-01