Package: metabinR 1.7.0
metabinR: Abundance and Compositional Based Binning of Metagenomes
Provide functions for performing abundance and compositional based binning on metagenomic samples, directly from FASTA or FASTQ files. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on input FASTA/FASTQ files for fast execution.
Authors:
metabinR_1.7.0.tar.gz
metabinR_1.7.0.zip(r-4.5)metabinR_1.7.0.zip(r-4.4)metabinR_1.7.0.zip(r-4.3)
metabinR_1.7.0.tgz(r-4.4-any)metabinR_1.7.0.tgz(r-4.3-any)
metabinR_1.7.0.tar.gz(r-4.5-noble)metabinR_1.7.0.tar.gz(r-4.4-noble)
metabinR_1.7.0.tgz(r-4.4-emscripten)metabinR_1.7.0.tgz(r-4.3-emscripten)
metabinR.pdf |metabinR.html✨
metabinR/json (API)
NEWS
# Install 'metabinR' in R: |
install.packages('metabinR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gkanogiannis/metabinr/issues
On BioConductor:metabinR-1.7.0(bioc 3.20)metabinR-1.6.0(bioc 3.19)
Last updated 2 months agofrom:611ad69e94
Exports:abundance_based_binningcomposition_based_binninghierarchical_binning
Dependencies:rJava
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Abundance based binning on metagenomic samples | abundance_based_binning |
Composition based binning on metagenomic samples | composition_based_binning |
Hierarchical (ABxCB) binning on metagenomic samples | hierarchical_binning |