Package: metabinR 1.9.0

Anestis Gkanogiannis

metabinR: Abundance and Compositional Based Binning of Metagenomes

Provide functions for performing abundance and compositional based binning on metagenomic samples, directly from FASTA or FASTQ files. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on input FASTA/FASTQ files for fast execution.

Authors:Anestis Gkanogiannis [aut, cre]

metabinR_1.9.0.tar.gz
metabinR_1.9.0.zip(r-4.5)metabinR_1.9.0.zip(r-4.4)metabinR_1.9.0.zip(r-4.3)
metabinR_1.9.0.tgz(r-4.4-any)metabinR_1.9.0.tgz(r-4.3-any)
metabinR_1.9.0.tar.gz(r-4.5-noble)metabinR_1.9.0.tar.gz(r-4.4-noble)
metabinR_1.9.0.tgz(r-4.4-emscripten)metabinR_1.9.0.tgz(r-4.3-emscripten)
metabinR.pdf |metabinR.html
metabinR/json (API)
NEWS

# Install 'metabinR' in R:
install.packages('metabinR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gkanogiannis/metabinr/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:metabinR-1.9.0(bioc 3.21)metabinR-1.8.0(bioc 3.20)

classificationclusteringmicrobiomesequencingsoftwareopenjdk

4.18 score 2 scripts 108 downloads 3 exports 1 dependencies

Last updated 3 months agofrom:e7264a212b. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winOKDec 29 2024
R-4.5-linuxOKDec 29 2024
R-4.4-winOKDec 29 2024
R-4.4-macOKDec 29 2024
R-4.3-winOKDec 29 2024
R-4.3-macOKDec 29 2024

Exports:abundance_based_binningcomposition_based_binninghierarchical_binning

Dependencies:rJava

metabinR

Rendered frommetabinR_vignette.Rmdusingknitr::rmarkdownon Dec 29 2024.

Last update: 2022-10-11
Started: 2022-10-01