Package: metabinR 1.9.0

Anestis Gkanogiannis

metabinR: Abundance and Compositional Based Binning of Metagenomes

Provide functions for performing abundance and compositional based binning on metagenomic samples, directly from FASTA or FASTQ files. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on input FASTA/FASTQ files for fast execution.

Authors:Anestis Gkanogiannis [aut, cre]

metabinR_1.9.0.tar.gz
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metabinR.pdf |metabinR.html✨
metabinR/json (API)
NEWS

# Install 'metabinR' in R:
install.packages('metabinR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gkanogiannis/metabinr/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:metabinR-1.9.0(bioc 3.21)metabinR-1.8.0(bioc 3.20)

classificationclusteringmicrobiomesequencingsoftwareopenjdk

4.18 score 2 scripts 154 downloads 3 exports 1 dependencies

Last updated 4 months agofrom:e7264a212b. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winOKJan 28 2025
R-4.5-macOKJan 28 2025
R-4.5-linuxOKJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:abundance_based_binningcomposition_based_binninghierarchical_binning

Dependencies:rJava

metabinR

Anestis Gkanogiannis

Rendered frommetabinR_vignette.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2022-10-11
Started: 2022-10-01