Package: metabinR 1.9.0

Anestis Gkanogiannis

metabinR: Abundance and Compositional Based Binning of Metagenomes

Provide functions for performing abundance and compositional based binning on metagenomic samples, directly from FASTA or FASTQ files. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on input FASTA/FASTQ files for fast execution.

Authors:Anestis Gkanogiannis [aut, cre]

metabinR_1.9.0.tar.gz
metabinR_1.9.0.zip(r-4.5)metabinR_1.9.0.zip(r-4.4)metabinR_1.9.0.zip(r-4.3)
metabinR_1.9.0.tgz(r-4.4-any)metabinR_1.9.0.tgz(r-4.3-any)
metabinR_1.9.0.tar.gz(r-4.5-noble)metabinR_1.9.0.tar.gz(r-4.4-noble)
metabinR_1.9.0.tgz(r-4.4-emscripten)metabinR_1.9.0.tgz(r-4.3-emscripten)
metabinR.pdf |metabinR.html✨
metabinR/json (API)
NEWS

# Install 'metabinR' in R:
install.packages('metabinR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gkanogiannis/metabinr/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:metabinR-1.9.0(bioc 3.21)metabinR-1.8.0(bioc 3.20)

classificationclusteringmicrobiomesequencingsoftwareopenjdk

4.18 score 2 scripts 108 downloads 3 exports 1 dependencies

Last updated 2 months agofrom:e7264a212b. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:abundance_based_binningcomposition_based_binninghierarchical_binning

Dependencies:rJava

metabinR

Anestis Gkanogiannis

Rendered frommetabinR_vignette.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2022-10-11
Started: 2022-10-01