Package: metabCombiner 1.15.2
metabCombiner: Method for Combining LC-MS Metabolomics Feature Measurements
This package aligns LC-HRMS metabolomics datasets acquired from biologically similar specimens analyzed under similar, but not necessarily identical, conditions. Peak-picked and simply aligned metabolomics feature tables (consisting of m/z, rt, and per-sample abundance measurements, plus optional identifiers & adduct annotations) are accepted as input. The package outputs a combined table of feature pair alignments, organized into groups of similar m/z, and ranked by a similarity score. Input tables are assumed to be acquired using similar (but not necessarily identical) analytical methods.
Authors:
metabCombiner_1.15.2.tar.gz
metabCombiner_1.15.2.zip(r-4.5)metabCombiner_1.15.2.zip(r-4.4)metabCombiner_1.15.2.zip(r-4.3)
metabCombiner_1.15.2.tgz(r-4.4-arm64)metabCombiner_1.15.2.tgz(r-4.4-x86_64)metabCombiner_1.15.2.tgz(r-4.3-arm64)metabCombiner_1.15.2.tgz(r-4.3-x86_64)
metabCombiner_1.15.2.tar.gz(r-4.5-noble)metabCombiner_1.15.2.tar.gz(r-4.4-noble)
metabCombiner_1.15.2.tgz(r-4.4-emscripten)metabCombiner_1.15.2.tgz(r-4.3-emscripten)
metabCombiner.pdf |metabCombiner.html✨
metabCombiner/json (API)
NEWS
# Install 'metabCombiner' in R: |
install.packages('metabCombiner', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hhabra/metabcombiner/issues
- metabBatches - Three LC-MS Metabolomics Batch Datasets
- plasma20 - 20 minute LC-MS Analysis of Human Plasma
- plasma30 - 30 minute LC-MS Analysis of Human Plasma
On BioConductor:metabCombiner-1.15.2(bioc 3.20)metabCombiner-1.14.0(bioc 3.19)
Last updated 1 months agofrom:d2488243c1
Exports:adductDatabatchCombinecalcScorescalcScoresParamcombineDatacombinedTabledatasetsevaluateParamsfeatDatafilteredfit_gamfit_loessfitgamParamfitloessParamgetAnchorsgetCoefficientsgetDatagetExtragetModelgetSamplesgetStatsidDatalabelRowslabelRowsParammetabCombinemetabCombinermetabDatamzDatamzFitmzfitParamnonmatchedopts.duplicateplotplot_fitQDatareduceTablereduceTableParamrtDataselectAnchorsselectAnchorsParamupdateTableswrite2filexxyy
Dependencies:BiocGenericscaretclasscliclockcodetoolscolorspacecpp11data.tablediagramdigestdplyre1071ellipsisfansifarverforeachfuturefuture.applygenericsggplot2globalsgluegowergtablehardhatipredisobanditeratorsKernSmoothlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixmatrixStatsmgcvModelMetricsmunsellnlmennetnumDerivparallellypillarpkgconfigplyrpROCprodlimprogressrproxypurrrR6RColorBrewerRcpprecipesreshape2rlangrpartS4VectorsscalesshapeSQUAREMstringistringrsurvivaltibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithr