Package: mdqc 1.75.0
Gabriela Cohen-Freue
mdqc: Mahalanobis Distance Quality Control for microarrays
MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.
Authors:
mdqc_1.75.0.tar.gz
mdqc_1.75.0.zip(r-4.7)mdqc_1.75.0.zip(r-4.6)mdqc_1.75.0.zip(r-4.5)
mdqc_1.75.0.tgz(r-4.6-any)mdqc_1.75.0.tgz(r-4.5-any)
mdqc_1.75.0.tar.gz(r-4.7-any)mdqc_1.75.0.tar.gz(r-4.6-any)
mdqc_1.75.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
mdqc/json (API)
| # Install 'mdqc' in R: |
| install.packages('mdqc', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- allQC - QC report for MLL.B
On BioConductor:mdqc-1.75.0(bioc 3.24)mdqc-1.74.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:cad6b1922b. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 127 | ||
| linux-devel-x86_64 | NOTE | 154 | ||
| source / vignettes | OK | 164 | ||
| linux-release-x86_64 | NOTE | 194 | ||
| macos-release-arm64 | NOTE | 66 | ||
| macos-oldrel-arm64 | NOTE | 71 | ||
| windows-devel | NOTE | 68 | ||
| windows-release | NOTE | 66 | ||
| windows-oldrel | NOTE | 68 | ||
| wasm-release | OK | 91 |
Exports:mdqcprcomp.robust
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| MDQC: Mahalanobis Distance Quality Control | mdqc-package |
| QC report for MLL.B | allQC |
| MDQC: Mahalanobis Distance Quality Control | mdqc |
| The plot method for a MDQC object | plot.mdqc |
| Principal Components Analysis using Robust Estimators | prcomp.robust |