{ "_id": "6a102733acfb0bcc41c8febb", "Package": "mdqc", "Type": "Package", "Title": "Mahalanobis Distance Quality Control for microarrays", "Version": "1.75.0", "Date": "2008-02-27", "Author": "Justin Harrington", "Maintainer": "Gabriela Cohen-Freue ", "Description": "MDQC is a multivariate quality assessment method for\nmicroarrays based on quality control (QC) reports. The\nMahalanobis distance of an array's quality attributes is used\nto measure the similarity of the quality of that array against\nthe quality of the other arrays. Then, arrays with unusually\nhigh distances can be flagged as potentially low-quality.", "License": "LGPL (>= 2)", "biocViews": "Microarray, QualityControl", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:32:43 UTC", "RemoteUrl": "https://github.com/bioc/mdqc", "RemoteRef": "HEAD", "RemoteSha": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 09:48:12 UTC", "User": "root" }, "MD5sum": "3fbb29236d308f7e7ddecd8441a4c13b", "_user": "bioc", "_type": "src", "_file": "mdqc_1.75.0.tar.gz", "_fileid": "b4b07f0eed8bac1c35488c7ed30d834e9384456760b03b3a0659f3d15773bc0e", "_filesize": 263152, "_sha256": "b4b07f0eed8bac1c35488c7ed30d834e9384456760b03b3a0659f3d15773bc0e", "_created": "2026-05-22T09:48:12.000Z", "_published": "2026-05-22T09:51:47.714Z", "_jobs": [ { "job": 77356076025, "time": 129, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7157672784" }, { "job": 77356075993, "time": 180, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7157688249" }, { "job": 77356076125, "time": 130, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7157673555" }, { "job": 77356075982, "time": 103, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7157665214" }, { "job": 77356075990, "time": 95, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7157662844" }, { "job": 77355727190, "time": 139, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7157634004" }, { "job": 77356076007, "time": 86, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157660706" }, { "job": 77356076096, "time": 70, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7157655530" }, { "job": 77356076134, "time": 75, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7157657104" }, { "job": 77356076138, "time": 108, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7157666764" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/mdqc", "_commit": { "id": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379563 }, "_maintainer": { "name": "Gabriela Cohen-Freue", "email": "gcohen@mrl.ubc.ca" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.2.1", "role": "Depends" }, { "package": "cluster", "role": "Depends" }, { "package": "MASS", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.75.0", "bioc": "3.24" }, { "branch": "release", "version": "1.74.0", "bioc": "3.23" } ], "_topics": [ "microarray", "qualitycontrol" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 548, "source": "https://www.bioconductor.org/packages/stats/bioc/mdqc" }, "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mdqc.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "mdqc", "prcomp.robust" ], "_datasets": [ { "name": "allQC", "title": "QC report for MLL.B", "object": "allQC", "file": "allQC.rda", "class": [ "data.frame" ], "fields": [ "Scale Factor", "Percent Present", "Average Background", "Minimum Background", "Maximum Background", "BioB", "BioC", "BioD", "CreX", "AFFX-HSAC07/X00351.3'/5'", "AFFX-HUMGAPDH/M33197.3'/5'" ], "rows": 20, "table": true, "tojson": true } ], "_help": [ { "page": "mdqc-package", "title": "MDQC: Mahalanobis Distance Quality Control", "topics": [ "mdqc-package" ] }, { "page": "allQC", "title": "QC report for MLL.B", "topics": [ "allQC" ] }, { "page": "mdqc", "title": "MDQC: Mahalanobis Distance Quality Control", "topics": [ "mdqc" ] }, { "page": "plot.mdqc", "title": "The plot method for a MDQC object", "topics": [ "plot.mdqc" ] }, { "page": "prcomp.robust", "title": "Principal Components Analysis using Robust Estimators", "topics": [ "prcomp.robust" ] } ], "_rundeps": [ "cluster", "MASS" ], "_vignettes": [ { "source": "mdqcvignette.Rnw", "filename": "mdqcvignette.pdf", "title": "Introduction to MDQC", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:02:58", "modified": "2013-11-01 20:02:58", "commits": 1 } ], "_score": 3.778151250383644, "_indexed": true, "_nocasepkg": "mdqc", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.75.0", "date": "2026-05-22T09:51:11.000Z", "distro": "noble", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "40ce0b3e5d20325c2f0523bf9db56e30696230e9c8ec4a920868a5ba6e681ba0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.6.0", "os": "linux", "version": "1.75.0", "date": "2026-05-22T09:50:22.000Z", "distro": "noble", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "bf03ff6e701a5825895a691ae6835dea80124440fa72b6869b52d80ffbbf3c52", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.5.3", "os": "mac", "version": "1.75.0", "date": "2026-05-22T09:49:59.000Z", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "442321317b086059e3cf6c3a81d5be80a5f62eb3996eafdb23492dbf494c678f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.6.0", "os": "mac", "version": "1.75.0", "date": "2026-05-22T09:49:49.000Z", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "a57f79edfb599c5e8e0a1a111527fc91fc35d8676808c61f3eb50995e08c1592", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.6.0", "os": "wasm", "version": "1.75.0", "date": "2026-05-22T09:49:53.000Z", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "5bb47e1205b9781198fd8de7842e97c380b2c79a4e94ed493b36a37dfece8027", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.7.0", "os": "win", "version": "1.75.0", "date": "2026-05-22T09:49:20.000Z", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "6618351fe2b9df1e9fe6b17a9db8ff94fa818cae6505b27a946e555fd96c71bc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.5.3", "os": "win", "version": "1.75.0", "date": "2026-05-22T09:49:24.000Z", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "44671722fdfe3c2c6bd2de3731baca2887acc1812f88943db44669cd67e6828f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" }, { "r": "4.6.0", "os": "win", "version": "1.75.0", "date": "2026-05-22T09:49:11.000Z", "commit": "cad6b1922b709de6e6f34e20fbb2a38d18980d8d", "fileid": "fe045067b6c82ab2662c8ba07fbd610068e68b3e76da54f5a3ce3df5880092b5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26280644338" } ] }