Package: mapscape 1.29.0

Maia Smith

mapscape: mapscape

MapScape integrates clonal prevalence, clonal hierarchy, anatomic and mutational information to provide interactive visualization of spatial clonal evolution. There are four inputs to MapScape: (i) the clonal phylogeny, (ii) clonal prevalences, (iii) an image reference, which may be a medical image or drawing and (iv) pixel locations for each sample on the referenced image. Optionally, MapScape can accept a data table of mutations for each clone and their variant allele frequencies in each sample. The output of MapScape consists of a cropped anatomical image surrounded by two representations of each tumour sample. The first, a cellular aggregate, visually displays the prevalence of each clone. The second shows a skeleton of the clonal phylogeny while highlighting only those clones present in the sample. Together, these representations enable the analyst to visualize the distribution of clones throughout anatomic space.

Authors:Maia Smith [aut, cre]

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mapscape.pdf |mapscape.html✨
mapscape/json (API)

Peer review:

On BioConductor:mapscape-1.29.0(bioc 3.20)mapscape-1.28.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 0.82 score 31 dependencies

Last updated 2 months agofrom:68baf1c0c7

Exports:mapscapemapscapeOutputrenderMapscape

Dependencies:base64encbslibcachemclidigestevaluatefastmapfontawesomefsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclemagrittrmemoisemimeR6rappdirsrlangrmarkdownsassstringistringrtinytexvctrsxfunyaml