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  "Description": "MapScape integrates clonal prevalence, clonal hierarchy,\nanatomic and mutational information to provide interactive\nvisualization of spatial clonal evolution. There are four\ninputs to MapScape: (i) the clonal phylogeny, (ii) clonal\nprevalences, (iii) an image reference, which may be a medical\nimage or drawing and (iv) pixel locations for each sample on\nthe referenced image. Optionally, MapScape can accept a data\ntable of mutations for each clone and their variant allele\nfrequencies in each sample. The output of MapScape consists of\na cropped anatomical image surrounded by two representations of\neach tumour sample. The first, a cellular aggregate, visually\ndisplays the prevalence of each clone. The second shows a\nskeleton of the clonal phylogeny while highlighting only those\nclones present in the sample. Together, these representations\nenable the analyst to visualize the distribution of clones\nthroughout anatomic space.",
  "License": "GPL-3",
  "RoxygenNote": "6.0.1",
  "biocViews": "Visualization",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:45:08 UTC",
  "RemoteUrl": "https://github.com/bioc/mapscape",
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  "Author": "Maia Smith [aut, cre]",
  "Maintainer": "Maia Smith <maiaannesmith@gmail.com>",
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        "Custom sample layout",
        "Number of cells in cellular aggregate representation",
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        "Show or hide low prevalence genotypes",
        "Show low prevalence genotypes",
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      "modified": "2018-08-30 17:51:37",
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