Experiment and sample description | Salmon quantification | Sample information | SummarizedExperiment | Acknowledgments | Session info
Package: macrophage 1.29.1
Michael Love
macrophage: Human macrophage immune response
This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.
Authors:
macrophage_1.29.1.tar.gz
macrophage_1.29.1.tar.gz(r-4.7-any)macrophage_1.29.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
macrophage/json (API)
| # Install 'macrophage' in R: |
| install.packages('macrophage', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- gse - Macrophage dataset - Salmon quantification
- macro_tx2gene - Macrophage dataset - transcript-to-gene table
- macro_txp_se - Macrophage dataset - transcript-level quantification with inferential replicates
On BioConductor:macrophage-1.29.1(data/experiment 3.24)macrophage-1.28.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatasequencingdatarnaseqdatadatapkg
Last updated from:2ba828bcd7. Checks:1 ERROR, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 124 | ||
| linux-devel | OK | 166 | ||
| source / vignettes | OK | 266 | ||
| linux-release | OK | 166 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Salmon quantifications for human macrophage immune response | macrophage-package |
| Macrophage dataset - Salmon quantification | gse |
| Macrophage dataset - transcript-to-gene table | macro_tx2gene |
| Macrophage dataset - transcript-level quantification with inferential replicates | macro_txp_se |
