Package: maPredictDSC 1.45.0
Adi Laurentiu Tarca
maPredictDSC: Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge
This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.
Authors:
maPredictDSC_1.45.0.tar.gz
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maPredictDSC.pdf |maPredictDSC.html✨
maPredictDSC/json (API)
| # Install 'maPredictDSC' in R: |
| install.packages('maPredictDSC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:maPredictDSC-1.45.0(bioc 3.21)maPredictDSC-1.44.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 months agofrom:0d81f5585a. Checks:2 ERROR, 5 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | FAIL | Feb 06 2025 |
| R-4.5-win | WARNING | Feb 06 2025 |
| R-4.5-linux | ERROR | Feb 06 2025 |
| R-4.4-win | WARNING | Feb 06 2025 |
| R-4.4-mac | WARNING | Feb 06 2025 |
| R-4.3-win | WARNING | Feb 06 2025 |
| R-4.3-mac | WARNING | Feb 06 2025 |
Exports:aggregateDSCperfDSCpredictDSC
Dependencies:affyaffyioAnnotationDbiaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64bitopsblobcachemcaretcaToolsclasscliclockcodetoolscolorspacecpp11crayoncurldata.tableDBIdiagramdigestdplyre1071evaluatefansifarverfastmapforeachfuturefuture.applygcrmagenericsGenomeInfoDbGenomeInfoDbDataggplot2globalsgluegowergplotsgtablegtoolshardhathgu133plus2.dbhighrhttripredIRangesisobanditeratorsjsonliteKEGGRESTKernSmoothknitrlabelinglatticelavalifecyclelimmalistenvlubridateLungCancerACvsSCCGEOmagrittrMASSMatrixmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivopensslorg.Hs.eg.dbparallellypillarpkgconfigplogrplyrpngpreprocessCorepROCprodlimprogressrproxypurrrR6RColorBrewerRcpprecipesreshape2rlangROCROCRrpartRSQLiteS4VectorsscalesshapesparsevctrsSQUAREMstatmodstringistringrsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryaml
