Package: maPredictDSC 1.45.0

Adi Laurentiu Tarca

maPredictDSC: Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge

This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.

Authors:Adi Laurentiu Tarca <[email protected]>

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maPredictDSC/json (API)

# Install 'maPredictDSC' in R:
install.packages('maPredictDSC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:maPredictDSC-1.45.0(bioc 3.21)maPredictDSC-1.44.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayclassification

2.30 score 2 scripts 250 downloads 1 mentions 3 exports 126 dependencies

Last updated 2 months agofrom:0d81f5585a. Checks:ERROR: 2 WARNING: 5. Indexed: yes.

TargetResultDate
Doc / VignettesFAILDec 20 2024
R-4.5-winWARNINGNov 17 2024
R-4.5-linuxERRORDec 20 2024
R-4.4-winWARNINGNov 17 2024
R-4.4-macWARNINGDec 20 2024
R-4.3-winWARNINGNov 17 2024
R-4.3-macWARNINGDec 20 2024

Exports:aggregateDSCperfDSCpredictDSC

Dependencies:affyaffyioAnnotationDbiaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64bitopsblobcachemcaretcaToolsclasscliclockcodetoolscolorspacecpp11crayoncurldata.tableDBIdiagramdigestdplyre1071evaluatefansifarverfastmapforeachfuturefuture.applygcrmagenericsGenomeInfoDbGenomeInfoDbDataggplot2globalsgluegowergplotsgtablegtoolshardhathgu133plus2.dbhighrhttripredIRangesisobanditeratorsjsonliteKEGGRESTKernSmoothknitrlabelinglatticelavalifecyclelimmalistenvlubridateLungCancerACvsSCCGEOmagrittrMASSMatrixmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivopensslorg.Hs.eg.dbparallellypillarpkgconfigplogrplyrpngpreprocessCorepROCprodlimprogressrproxypurrrR6RColorBrewerRcpprecipesreshape2rlangROCROCRrpartRSQLiteS4VectorsscalesshapeSQUAREMstatmodstringistringrsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc