Package: maPredictDSC 1.45.0

Adi Laurentiu Tarca

maPredictDSC: Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge

This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.

Authors:Adi Laurentiu Tarca <[email protected]>

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maPredictDSC/json (API)

# Install 'maPredictDSC' in R:
install.packages('maPredictDSC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:maPredictDSC-1.45.0(bioc 3.21)maPredictDSC-1.44.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayclassification

2.30 score 2 scripts 298 downloads 1 mentions 3 exports 126 dependencies

Last updated 5 months agofrom:0d81f5585a. Checks:3 ERROR, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILMar 08 2025
R-4.5-winWARNINGMar 08 2025
R-4.5-macWARNINGMar 08 2025
R-4.5-linuxERRORMar 08 2025
R-4.4-winWARNINGMar 08 2025
R-4.4-macWARNINGMar 08 2025
R-4.4-linuxERRORMar 08 2025
R-4.3-winWARNINGMar 08 2025
R-4.3-macWARNINGMar 08 2025

Exports:aggregateDSCperfDSCpredictDSC

Dependencies:affyaffyioAnnotationDbiaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64bitopsblobcachemcaretcaToolsclasscliclockcodetoolscolorspacecpp11crayoncurldata.tableDBIdiagramdigestdplyre1071evaluatefansifarverfastmapforeachfuturefuture.applygcrmagenericsGenomeInfoDbGenomeInfoDbDataggplot2globalsgluegowergplotsgtablegtoolshardhathgu133plus2.dbhighrhttripredIRangesisobanditeratorsjsonliteKEGGRESTKernSmoothknitrlabelinglatticelavalifecyclelimmalistenvlubridateLungCancerACvsSCCGEOmagrittrMASSMatrixmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivopensslorg.Hs.eg.dbparallellypillarpkgconfigplogrplyrpngpreprocessCorepROCprodlimprogressrproxypurrrR6RColorBrewerRcpprecipesreshape2rlangROCROCRrpartRSQLiteS4VectorsscalesshapesparsevctrsSQUAREMstatmodstringistringrsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryaml