{
  "_id": "6a49427318cdde069385e5e0",
  "Package": "maPredictDSC",
  "Version": "1.51.0",
  "Date": "2013-6-27",
  "Title": "Phenotype prediction using microarray data: approach of the best\noverall team in the IMPROVER Diagnostic Signature Challenge",
  "Author": "Adi Laurentiu Tarca <atarca@med.wayne.edu>",
  "Maintainer": "Adi Laurentiu Tarca <atarca@med.wayne.edu>",
  "Description": "This package implements the classification pipeline of the\nbest overall team (Team221) in the IMPROVER Diagnostic\nSignature Challenge. Additional functionality is added to\ncompare 27 combinations of data preprocessing, feature\nselection and classifier types.",
  "License": "GPL-2",
  "URL": "http://bioinformaticsprb.med.wayne.edu/maPredictDSC",
  "biocViews": "Microarray, Classification",
  "Collate": "aggregateDSC.R perfDSC.R predictDSC.R maPredictDSC.R",
  "LazyLoad": "yes",
  "Packaged": {
    "Date": "2026-07-04 09:29:56 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:37:52 UTC",
  "RemoteUrl": "https://github.com/bioc/maPredictDSC",
  "RemoteRef": "HEAD",
  "RemoteSha": "c471e01dff9fe940598236a550716279ec411ed4",
  "NeedsCompilation": "no",
  "_user": "bioc",
  "_type": "src",
  "_file": "maPredictDSC_1.51.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/595647e968d784899d35277c2454cdc8bb5d18a613ae5f9a469aade04e34d002",
  "_filesize": 207708,
  "_sha256": "595647e968d784899d35277c2454cdc8bb5d18a613ae5f9a469aade04e34d002",
  "_expires": "2026-10-12T17:27:14.000Z",
  "_created": "2026-07-04T09:29:56.000Z",
  "_published": "2026-07-04T17:27:15.657Z",
  "_bioccheck": {
    "error": 2,
    "warning": 3,
    "note": 15
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929",
  "_status": "success",
  "_upstream": "https://github.com/bioc/maPredictDSC",
  "_commit": {
    "id": "c471e01dff9fe940598236a550716279ec411ed4",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379872
  },
  "_maintainer": {
    "name": "Adi Laurentiu Tarca",
    "email": "atarca@med.wayne.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85152159180,
      "time": 226,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8080496725"
    },
    {
      "job": 85152159074,
      "time": 413,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8080517400"
    },
    {
      "job": 85152159140,
      "time": 415,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8080517568"
    },
    {
      "job": 85152159082,
      "time": 224,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8080796477"
    },
    {
      "job": 85152158949,
      "time": 216,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8080849856"
    },
    {
      "job": 85152158989,
      "time": 354,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080469267"
    },
    {
      "job": 85152159146,
      "time": 209,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8080495057"
    },
    {
      "job": 85152159179,
      "time": 344,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8080510063"
    },
    {
      "job": 85152159171,
      "time": 347,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8080510183"
    },
    {
      "job": 85152159153,
      "time": 323,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8080507575"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15.0",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Depends"
    },
    {
      "package": "affy",
      "role": "Depends"
    },
    {
      "package": "limma",
      "role": "Depends"
    },
    {
      "package": "gcrma",
      "role": "Depends"
    },
    {
      "package": "ROC",
      "role": "Depends"
    },
    {
      "package": "class",
      "role": "Depends"
    },
    {
      "package": "e1071",
      "role": "Depends"
    },
    {
      "package": "caret",
      "role": "Depends"
    },
    {
      "package": "hgu133plus2.db",
      "role": "Depends"
    },
    {
      "package": "ROCR",
      "role": "Depends"
    },
    {
      "package": "AnnotationDbi",
      "role": "Depends"
    },
    {
      "package": "LungCancerACvsSCCGEO",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.51.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.50.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "classification"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 1,
  "_searchresults": 2,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/maPredictDSC.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "aggregateDSC",
    "perfDSC",
    "predictDSC"
  ],
  "_help": [
    {
      "page": "aggregateDSC",
      "title": "Combine predictions from several fitted models fitted with predictDSC",
      "topics": [
        "aggregateDSC"
      ]
    },
    {
      "page": "perfDSC",
      "title": "Area Under the Precision-Recall Curve (AUPR), Belief Confusion Metric (BCM) and Correct Class Enrichment Metric (CCEM).",
      "topics": [
        "perfDSC"
      ]
    },
    {
      "page": "predictDSC",
      "title": "Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge",
      "topics": [
        "predictDSC"
      ]
    }
  ],
  "_rundeps": [
    "affy",
    "affyio",
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "cachem",
    "caret",
    "caTools",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "diagram",
    "digest",
    "dplyr",
    "e1071",
    "evaluate",
    "farver",
    "fastmap",
    "foreach",
    "future",
    "future.apply",
    "gcrma",
    "generics",
    "ggplot2",
    "globals",
    "glue",
    "gower",
    "gplots",
    "gtable",
    "gtools",
    "hardhat",
    "hgu133plus2.db",
    "highr",
    "httr",
    "ipred",
    "IRanges",
    "isoband",
    "iterators",
    "jsonlite",
    "KEGGREST",
    "KernSmooth",
    "knitr",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "limma",
    "listenv",
    "lubridate",
    "LungCancerACvsSCCGEO",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "ModelMetrics",
    "nlme",
    "nnet",
    "numDeriv",
    "openssl",
    "org.Hs.eg.db",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "preprocessCore",
    "pROC",
    "prodlim",
    "progressr",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "recipes",
    "reshape2",
    "rlang",
    "ROC",
    "ROCR",
    "rpart",
    "RSQLite",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "shape",
    "sparsevctrs",
    "SQUAREM",
    "statmod",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "maPredictDSC.Rnw",
      "filename": "maPredictDSC.pdf",
      "title": "maPredictDSC",
      "engine": "utils::Sweave",
      "headings": [
        "Overview",
        "Developing prediction models with maPredictDSC package"
      ],
      "created": "2013-11-01 20:31:03",
      "modified": "2013-11-01 20:31:03",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "mapredictdsc",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.51.0",
      "date": "2026-07-04T09:34:15.000Z",
      "distro": "resolute",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/ab9ce41aa0f36a80131f8f6060dd0d533905f45df68d218cbb6739e1da21b62f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.51.0",
      "date": "2026-07-04T09:34:26.000Z",
      "distro": "resolute",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/64bc7367ba92f0570f85d439e12e2f07788fb6862e5d2c81b772ee7ea9fb6e07",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.51.0",
      "date": "2026-07-04T10:16:05.000Z",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/c34e6970df3b4cf12c62cdf4436d99031a1fcba8ed41b4a7a6b0d1c3ee7cd936",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.51.0",
      "date": "2026-07-04T10:24:17.000Z",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/b9833de3fcb307166bd72cf01fb141bf0d8f12254b30451599853b28b43bc8c1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.51.0",
      "date": "2026-07-04T09:33:53.000Z",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/d7b580f9bbaca5486080fdf77aa338935a7aa7bd91a86e04089ef6912a200b99",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.51.0",
      "date": "2026-07-04T09:32:17.000Z",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/c0a36461dc2328555b0dbc69a7e27ae166a305c77ffa4a7d2e3e9813832e910b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.51.0",
      "date": "2026-07-04T09:32:18.000Z",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/55db935993c7b2e972d79cf16e5d39828b884e8f57c7402dabe2551f7c7f12a5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.51.0",
      "date": "2026-07-04T09:31:56.000Z",
      "commit": "c471e01dff9fe940598236a550716279ec411ed4",
      "fileid": "https://r2.ropensci.org/0b1c85f7737daf3915d68e442d4a7f22da5786641e8c23e6c5f2ee956d1d728d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28701841929"
    }
  ]
}