Package: mBPCR 1.61.0

P.M.V. Rancoita

mBPCR: Bayesian Piecewise Constant Regression for DNA copy number estimation

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Authors:P.M.V. Rancoita <[email protected]>, with contributions from M. Hutter <[email protected]>

mBPCR_1.61.0.tar.gz
mBPCR_1.61.0.zip(r-4.5)mBPCR_1.61.0.zip(r-4.4)mBPCR_1.61.0.zip(r-4.3)
mBPCR_1.61.0.tgz(r-4.5-any)mBPCR_1.61.0.tgz(r-4.4-any)mBPCR_1.61.0.tgz(r-4.3-any)
mBPCR_1.61.0.tar.gz(r-4.5-noble)mBPCR_1.61.0.tar.gz(r-4.4-noble)
mBPCR_1.61.0.tgz(r-4.4-emscripten)mBPCR_1.61.0.tgz(r-4.3-emscripten)
mBPCR.pdf |mBPCR.html
mBPCR/json (API)

# Install 'mBPCR' in R:
install.packages('mBPCR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • jekoChr11Array250Knsp - Affymetrix GeneChip Mapping 250K NSP Array data of JEKO-1 cell line
  • rec10k - Affymetrix GeneChip Mapping 10K Array data of REC-1 cell line

On BioConductor:mBPCR-1.61.0(bioc 3.21)mBPCR-1.60.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

acghsnpmicroarraycopynumbervariation

3.90 score 1 scripts 290 downloads 4 mentions 15 exports 114 dependencies

Last updated 5 months agofrom:4db7f5fbec. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKApr 03 2025
R-4.5-winOKApr 03 2025
R-4.5-macOKApr 03 2025
R-4.5-linuxOKApr 03 2025
R-4.4-winOKApr 03 2025
R-4.4-macOKApr 03 2025
R-4.4-linuxOKApr 03 2025
R-4.3-winOKApr 03 2025
R-4.3-macOKApr 03 2025

Exports:centromerecomputeA10computeLA0VectcomputeMBPCRcomputePCRegcomputeRecursionscomputeRegrCurveestGlobParamestProfileWithMBPCRestProfileWithMBPCRforOligoSnpSetimportCNDataindexLA0logAddplotEstProfilewriteEstProfile

Dependencies:abindaffyioaskpassbackportsBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobbootbroomcachemclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDNAcopydplyrfansifastmapffforcatsforeachformula.toolsgdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglmnetglueGWASExactHWGWASToolshavenhmshttrIRangesiteratorsjomojsonlitelatticelifecyclelme4lmtestlogistfmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivoligoClassesopenssloperator.toolsordinalpanpillarpkgconfigplogrprettyunitsprogresspurrrquantregquantsmoothR6rbibutilsRcppRcppEigenRdpackreadrreformulasrlangrpartRSQLiteS4ArraysS4VectorssandwichshapeSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfUCSC.utilsutf8vctrsvroomwithrXVectorzoo

mBPCR

Rendered frommBPCR.Rnwusingutils::Sweaveon Apr 03 2025.

Last update: 2020-01-11
Started: 2013-11-01