Package: mBPCR 1.59.0

P.M.V. Rancoita

mBPCR: Bayesian Piecewise Constant Regression for DNA copy number estimation

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Authors:P.M.V. Rancoita <[email protected]>, with contributions from M. Hutter <[email protected]>

mBPCR_1.59.0.tar.gz
mBPCR_1.59.0.zip(r-4.5)mBPCR_1.59.0.zip(r-4.4)mBPCR_1.59.0.zip(r-4.3)
mBPCR_1.59.0.tgz(r-4.4-any)mBPCR_1.59.0.tgz(r-4.3-any)
mBPCR_1.59.0.tar.gz(r-4.5-noble)mBPCR_1.59.0.tar.gz(r-4.4-noble)
mBPCR_1.59.0.tgz(r-4.4-emscripten)mBPCR_1.59.0.tgz(r-4.3-emscripten)
mBPCR.pdf |mBPCR.html✨
mBPCR/json (API)

Peer review:

On BioConductor:mBPCR-1.59.0(bioc 3.20)mBPCR-1.58.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

15 exports 1.75 score 112 dependencies 4 mentions

Last updated 2 months agofrom:139da23d2d

Exports:centromerecomputeA10computeLA0VectcomputeMBPCRcomputePCRegcomputeRecursionscomputeRegrCurveestGlobParamestProfileWithMBPCRestProfileWithMBPCRforOligoSnpSetimportCNDataindexLA0logAddplotEstProfilewriteEstProfile

Dependencies:abindaffyioaskpassbackportsBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobbootbroomcachemclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDNAcopydplyrfansifastmapffforcatsforeachformula.toolsgdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglmnetglueGWASExactHWGWASToolshavenhmshttrIRangesiteratorsjomojsonlitelatticelifecyclelme4lmtestlogistfmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivoligoClassesopenssloperator.toolsordinalpanpillarpkgconfigplogrprettyunitsprogresspurrrquantregquantsmoothR6RcppRcppEigenreadrrlangrpartRSQLiteS4ArraysS4VectorssandwichshapeSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfUCSC.utilsutf8vctrsvroomwithrXVectorzlibbioczoo