Package: les 1.55.0

Julian Gehring

les: Identifying Differential Effects in Tiling Microarray Data

The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.

Authors:Julian Gehring, Clemens Kreutz, Jens Timmer

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les.pdf |les.html✨
les/json (API)
NEWS

# Install 'les' in R:
install.packages('les', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • exprs - Spike-in ChIP-chip data set
  • pos - Spike-in ChIP-chip data set
  • pval - Spike-in ChIP-chip data set
  • reference - Spike-in ChIP-chip data set

On BioConductor:les-1.55.0(bioc 3.20)les-1.54.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

14 exports 1.08 score 8 dependencies 1 dependents

Last updated 2 months agofrom:98165aae66

Exports:chi2ciepWeightestimateexportgaussWeightLesplotrectangWeightregionsshowsummarythresholdtriangWeight

Dependencies:bitopsbootcaToolsfdrtoolgplotsgtoolsKernSmoothRColorBrewer

Introduction to the les package: Identifying Differential Effects in Tiling Microarray Data with the Loci of Enhanced Significance Framework

Rendered fromles.Rnwusingutils::Sweaveon Jun 16 2024.

Last update: 2013-07-19
Started: 2013-07-19

Readme and manuals

Help Manual

Help pageTopics
Identifying Differential Effects in Tiling Microarray Datales-package les
chi2chi2 chi2,Les-method chi2-methods
cici ci,Les ci,Les-method ci-methods
estimateestimate estimate,Les-method estimate-methods
exportexport export,Les export,Les-method export-methods
Class 'Les'Les-class show,Les-method summary,Les-method [,Les-method [<-,Les-method
LesLes Les,ANY,numeric-method Les-methods
plot method for class Lesplot plot,Les plot,Les-method plot-methods
regionsregions regions,Les regions,Les-method regions-methods
Spike-in ChIP-chip data setexprs reference
Spike-in ChIP-chip data setpos pval
thresholdthreshold threshold,Les threshold,Les-method threshold-methods
Weighting functionsepWeight gaussWeight rectangWeight triangWeight weighting