Package: ivygapSE 1.29.0

VJ Carey

ivygapSE: A SummarizedExperiment for Ivy-GAP data

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Authors:Vince Carey

ivygapSE_1.29.0.tar.gz
ivygapSE_1.29.0.zip(r-4.5)ivygapSE_1.29.0.zip(r-4.4)ivygapSE_1.29.0.zip(r-4.3)
ivygapSE_1.29.0.tgz(r-4.4-any)ivygapSE_1.29.0.tgz(r-4.3-any)
ivygapSE_1.29.0.tar.gz(r-4.5-noble)ivygapSE_1.29.0.tar.gz(r-4.4-noble)
ivygapSE_1.29.0.tgz(r-4.4-emscripten)ivygapSE_1.29.0.tgz(r-4.3-emscripten)
ivygapSE.pdf |ivygapSE.html
ivygapSE/json (API)

# Install 'ivygapSE' in R:
install.packages('ivygapSE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • ivySE - IvySE: SummarizedExperiment for IvyGAP expression data and metadata

On BioConductor:ivygapSE-1.29.0(bioc 3.21)ivygapSE-1.28.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

transcriptionsoftwarevisualizationsurvivalgeneexpressionsequencing

4.20 score 16 scripts 190 downloads 9 exports 139 dependencies

Last updated 3 months agofrom:4df1812cd6. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winNOTEDec 31 2024
R-4.5-linuxNOTEDec 29 2024
R-4.4-winNOTEDec 31 2024
R-4.4-macNOTEDec 29 2024
R-4.3-winNOTEDec 31 2024
R-4.3-macNOTEDec 29 2024

Exports:designOverviewexprByTypegetRefLimmaivyGlimpsemakeGeneSetsnomenclatsubBlockDetailstumorDetailsvocab

Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbootbroombslibcachemcarcarDataclicolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydplyrevaluateexactRankTestsfansifarverfastmapfontawesomeFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrhtmltoolshtmlwidgetshttpuvhttrhwriterIRangesisobandjpegjquerylibjsonlitekm.ciKMsurvknitrlabelinglaterlatticelazyevallifecyclelme4magrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmaxstatmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplotlyplyrpngpolynompromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrstatixS4ArraysS4VectorssassscalesshinysourcetoolsSparseArraySparseMstringistringrSummarizedExperimentsurvivalsurvminersurvMiscsystibbletidyrtidyselecttinytexUCSC.utilsUpSetRutf8vctrsviridisLitewithrxfunxml2xtableXVectoryamlzoo

ivygapSE -- Bioconductor container for Ivy-GAP expression and metadata

Rendered fromivygapSE.Rmdusingknitr::rmarkdownon Dec 29 2024.

Last update: 2018-04-16
Started: 2017-06-03