Package: immApex 1.1.0
Nick Borcherding
immApex: Tools for Adaptive Immune Receptor Sequence-Based Keras Modeling
A set of tools to build tensorflow/keras3-based models in R from amino acid and nucleotide sequences focusing on adaptive immune receptors. The package includes pre-processing of sequences, unifying gene nomenclature usage, encoding sequences, and combining models. This package will serve as the basis of future immune receptor sequence functions/packages/models compatible with the scRepertoire ecosystem.
Authors:
immApex_1.1.0.tar.gz
immApex_1.1.0.zip(r-4.5)immApex_1.1.0.zip(r-4.4)immApex_1.1.0.zip(r-4.3)
immApex_1.1.0.tgz(r-4.4-any)immApex_1.1.0.tgz(r-4.3-any)
immApex_1.1.0.tar.gz(r-4.5-noble)immApex_1.1.0.tar.gz(r-4.4-noble)
immApex_1.1.0.tgz(r-4.4-emscripten)immApex_1.1.0.tgz(r-4.3-emscripten)
immApex.pdf |immApex.html✨
immApex/json (API)
NEWS
| # Install 'immApex' in R: |
| install.packages('immApex', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ncborcherding/immapex/issues
- immapex_AA.data - A list of amino acid properties
- immapex_blosum.pam.matrices - List of amino acid substitution matrices
- immapex_example.data - Example contig data for Apex
- immapex_gene.list - A list of IMGT gene names by genes, loci, and species
On BioConductor:immApex-1.1.0(bioc 3.21)immApex-1.0.0(bioc 3.20)
softwareimmunooncologysinglecellclassificationannotationsequencingmotifannotation
Last updated 22 days agofrom:858429fc3f. Checks:ERROR: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Oct 31 2024 |
| R-4.5-win | ERROR | Oct 31 2024 |
| R-4.5-linux | ERROR | Oct 31 2024 |
| R-4.4-win | ERROR | Oct 31 2024 |
| R-4.4-mac | ERROR | Oct 31 2024 |
| R-4.3-win | ERROR | Oct 31 2024 |
| R-4.3-mac | ERROR | Oct 31 2024 |
Exports:adjacencyMatrixformatGenesgenerateSequencesgeometricEncodergetIMGTgetIRinferCDRmutateSequencesonehotEncoderpositionalEncoderprobabilityMatrixpropertyEncodersequenceDecodertokenizeSequencesvariationalSequences
Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericscliconfigcrayoncurlDelayedArrayfansifastmapgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehashherehttrIRangesjsonlitekeras3latticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpngprocessxpsR6rappdirsRcppRcppTOMLreticulaterlangrprojrootrstudioapirvestS4ArraysS4VectorsselectrSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystensorflowtfautographtfrunstibbletidyselectUCSC.utilsutf8vctrswhiskerwithrxml2XVectoryamlzeallotzlibbioc
