NEWS
immApex 1.0.5
UNDERLYING CHANGES
getIMGT() checks for availability of IMGT website- Expanded Unit Tests
- Unit Tests and Vignette now evaluate for proper python installation overall
immApex 1.0.4
UNDERLYING CHANGES
- Optional testthat variationalSequences() evaulate presence of Keras
immApex 1.0.3
UNDERLYING CHANGES
- Drop evaluation of variationalSequences() example
immApex 1.0.2
UNDERLYING CHANGES
- Vignette includes eval of keras installation for certain chunks
immApex 1.0.1
UNDERLYING CHANGES
- Fix issue with optimizer call in
variationalSequences()
- Move package to keras3
- Version Bump to be consistent with Bioconductor release
immApex 0.99.5
UNDERLYING CHANGES
- Remove keras installation in vignette
- Removed lazydata loading
- Added @return to the data manual entries
- Update stop message for
propertyEncoder()
- Removed set.seed from
variationalSequences()
- Added runnable example for
variationalSequences()
- Added better handling of no connection in
getIMGT()
- Added max.retries to
getIMGT()
- Updated testthat for new IMGT version
immApex 0.99.3
UNDERLYING CHANGES
- Defining python version 3.10 for keras installation
immApex 0.99.2
UNDERLYING CHANGES
- Added discrete check and install_keras() to vignette
immApex 0.99.1
UNDERLYING CHANGES
- Added warning to
getIMGT() to mention IMGT license on first use
- import magrittr instead of dplyr
- Fixed issue with license error
- Added example to
positionalEncoder()
- Replaced discrete calling of "es =" in vignette
- Update readme to include keras based installation
- added set.seed() to vignette
- added introduction section to vignette with mention of other packages
- removed installation section from vignette (can't add BioC instructions until accepted)
- Fixed rendering issue with the vignette
- Subsampled example data and removed Omniscope example
- Updated testthat for
formatGenes() and inferCDR() for new example data
- Reduced size of test data
- Minimized usage of sapply() and X:Y per BiocCheck suggestions
- Modified print() messages to messages()
- Add verbose parameter to turn on/off processing steps
- Added links for example data formats