Package: igvShiny 1.1.0
igvShiny: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Authors:
igvShiny_1.1.0.tar.gz
igvShiny_1.1.0.zip(r-4.5)igvShiny_1.1.0.zip(r-4.4)igvShiny_1.1.0.zip(r-4.3)
igvShiny_1.1.0.tgz(r-4.4-any)igvShiny_1.1.0.tgz(r-4.3-any)
igvShiny_1.1.0.tar.gz(r-4.5-noble)igvShiny_1.1.0.tar.gz(r-4.4-noble)
igvShiny_1.1.0.tgz(r-4.4-emscripten)igvShiny_1.1.0.tgz(r-4.3-emscripten)
igvShiny.pdf |igvShiny.html✨
igvShiny/json (API)
NEWS
# Install 'igvShiny' in R: |
install.packages('igvShiny', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gladkia/igvshiny/issues
On BioConductor:igvShiny-1.1.0(bioc 3.20)igvShiny-1.0.0(bioc 3.19)
Last updated 2 months agofrom:ac9897c4d8
Exports:displayget_basic_genomesget_cas_genomesget_css_genomesget_tracks_dirgetGenomicRegiongetUrlGWASTrackigvShinyigvShinyOutputloadBamTrackFromLocalDataloadBamTrackFromURLloadBedGraphTrackloadBedGraphTrackFromURLloadBedTrackloadCramTrackFromURLloadGFF3TrackFromLocalDataloadGFF3TrackFromURLloadGwasTrackloadSegTrackloadVcfTrackparseAndValidateGenomeSpecremoveTracksByNameremoveUserAddedTracksrenderIgvShinyshowGenomicRegion
Dependencies:askpassbackportsbase64encBiocGenericsbitopsbslibcachemcheckmatecliclustercolorspacecommonmarkcrayoncurldigestevaluatefarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehighrhtmltoolshtmlwidgetshttpuvhttrIRangesjquerylibjsonliteknitrlabelinglambda.rlaterlifecyclemagrittrmemoisemimemunsellopensslpromisesR6randomcoloRrappdirsRColorBrewerRcppRCurlrlangrmarkdownRtsneS4VectorssassscalesshinysourcetoolsstringistringrsystinytexUCSC.utilsV8vctrsviridisLitewithrxfunxtableXVectoryamlzlibbioc