Package: idiogram 1.89.0

Karl J. Dykema

idiogram: idiogram

A package for plotting genomic data by chromosomal location

Authors:Karl J. Dykema <[email protected]>

idiogram_1.89.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
idiogram/json (API)

# Install 'idiogram' in R:
install.packages('idiogram', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Cf.cytoband - Cytogenetic Banding information
  • colo.eset - Data included for idiogram package examples
  • Hs.cytoband - Cytogenetic Banding information
  • Mm.cytoband - Cytogenetic Banding information
  • Rn.cytoband - Cytogenetic Banding information
  • ucsf.chr - Data included for idiogram package examples
  • vai.chr - Data included for idiogram package examples

On BioConductor:idiogram-1.89.0(bioc 3.24)idiogram-1.88.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualization

3.34 score 11 scripts 512 downloads 6 exports 39 dependencies

Last updated from:d1bd93a730. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR207
linux-devel-x86_64NOTE250
source / vignettesOK259
linux-release-x86_64NOTE212
macos-release-arm64NOTE190
macos-oldrel-arm64NOTE198
windows-develNOTE168
windows-releaseNOTE178
windows-oldrelNOTE151
wasm-releaseOK182

Exports:.rwb.usedChromExprsbuildChromLocation.2idiograbidiogrammidiogram

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplotrixpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXMLxtableXVector

HOWTO: idiogram

Rendered fromidiogram.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
A function to generate an instantiation of a chromLocation classbuildChromLocation.2
Class "cytoband"cytoband-class
Cytogenetic Banding informationCf.cytoband Hs.cytoband Mm.cytoband Rn.cytoband
idiograbidiograb
Plotting of Genomic Dataidiogram midiogram
data included for idiogram package examplescolo.eset idiogramExample ucsf.chr vai.chr