Standard idiogram plots | Interactive idiogram plots | Using idiogram with other packages
Package: idiogram 1.89.0
Karl J. Dykema
idiogram: idiogram
A package for plotting genomic data by chromosomal location
Authors:
idiogram_1.89.0.tar.gz
idiogram_1.89.0.zip(r-4.7)idiogram_1.89.0.zip(r-4.6)idiogram_1.89.0.zip(r-4.5)
idiogram_1.89.0.tgz(r-4.6-any)idiogram_1.89.0.tgz(r-4.5-any)
idiogram_1.89.0.tar.gz(r-4.7-any)idiogram_1.89.0.tar.gz(r-4.6-any)
idiogram_1.89.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
idiogram/json (API)
| # Install 'idiogram' in R: |
| install.packages('idiogram', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Cf.cytoband - Cytogenetic Banding information
- colo.eset - Data included for idiogram package examples
- Hs.cytoband - Cytogenetic Banding information
- Mm.cytoband - Cytogenetic Banding information
- Rn.cytoband - Cytogenetic Banding information
- ucsf.chr - Data included for idiogram package examples
- vai.chr - Data included for idiogram package examples
On BioConductor:idiogram-1.89.0(bioc 3.24)idiogram-1.88.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:d1bd93a730. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 194 | ||
| linux-devel-x86_64 | NOTE | 327 | ||
| source / vignettes | OK | 249 | ||
| linux-release-x86_64 | NOTE | 284 | ||
| macos-release-arm64 | NOTE | 155 | ||
| macos-oldrel-arm64 | NOTE | 173 | ||
| windows-devel | NOTE | 168 | ||
| windows-release | NOTE | 162 | ||
| windows-oldrel | NOTE | 169 | ||
| wasm-release | OK | 152 |
Exports:.rwb.usedChromExprsbuildChromLocation.2idiograbidiogrammidiogram
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplotrixpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A function to generate an instantiation of a chromLocation class | buildChromLocation.2 |
| Class "cytoband" | cytoband-class |
| Cytogenetic Banding information | Cf.cytoband Hs.cytoband Mm.cytoband Rn.cytoband |
| idiograb | idiograb |
| Plotting of Genomic Data | idiogram midiogram |
| data included for idiogram package examples | colo.eset idiogramExample ucsf.chr vai.chr |
