Package: idiogram 1.83.0
Karl J. Dykema
idiogram: idiogram
A package for plotting genomic data by chromosomal location
Authors:
idiogram_1.83.0.tar.gz
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idiogram_1.83.0.tgz(r-4.4-any)idiogram_1.83.0.tgz(r-4.3-any)
idiogram_1.83.0.tar.gz(r-4.5-noble)idiogram_1.83.0.tar.gz(r-4.4-noble)
idiogram_1.83.0.tgz(r-4.4-emscripten)idiogram_1.83.0.tgz(r-4.3-emscripten)
idiogram.pdf |idiogram.html✨
idiogram/json (API)
| # Install 'idiogram' in R: |
| install.packages('idiogram', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Cf.cytoband - Cytogenetic Banding information
- Hs.cytoband - Cytogenetic Banding information
- Mm.cytoband - Cytogenetic Banding information
- Rn.cytoband - Cytogenetic Banding information
- colo.eset - Data included for idiogram package examples
- ucsf.chr - Data included for idiogram package examples
- vai.chr - Data included for idiogram package examples
On BioConductor:idiogram-1.83.0(bioc 3.21)idiogram-1.82.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:fca554da01. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 17 2024 |
| R-4.5-win | NOTE | Dec 17 2024 |
| R-4.5-linux | NOTE | Dec 17 2024 |
| R-4.4-win | NOTE | Dec 17 2024 |
| R-4.4-mac | NOTE | Dec 17 2024 |
| R-4.3-win | NOTE | Dec 17 2024 |
| R-4.3-mac | NOTE | Dec 17 2024 |
Exports:.rwb.usedChromExprsbuildChromLocation.2idiograbidiogrammidiogram
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrplotrixpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A function to generate an instantiation of a chromLocation class | buildChromLocation.2 |
| Class "cytoband" | cytoband-class |
| Cytogenetic Banding information | Cf.cytoband Hs.cytoband Mm.cytoband Rn.cytoband |
| idiograb | idiograb |
| Plotting of Genomic Data | idiogram midiogram |
| data included for idiogram package examples | colo.eset idiogramExample ucsf.chr vai.chr |
