Package: iSEEtree 0.99.6

Giulio Benedetti

iSEEtree: Interactive visualisation for microbiome data

iSEEtree is an extension of iSEE for the TreeSummarizedExperiment. It leverages the functionality from the miaViz package for microbiome data visualisation to create panels that are specific for TreeSummarizedExperiment objects. Not surprisingly, it also depends on the generic panels from iSEE.

Authors:Giulio Benedetti [aut, cre], Ely Seraidarian [ctb], Leo Lahti [aut]

iSEEtree_0.99.6.tar.gz
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iSEEtree.pdf |iSEEtree.html✨
iSEEtree/json (API)
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Peer review:

Bug tracker:https://github.com/microbiome/iseetree/issues

On BioConductor:iSEEtree-0.99.5(bioc 3.20)

microbiomesoftwarevisualizationguishinyappsshiny-appsvisualisation

5 exports 3 stars 1.90 score 221 dependencies 5 scripts

Last updated 7 days agofrom:bd90d0dbaa. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:AbundanceDensityPlotAbundancePlotiSEERDAPlotRowTreePlot

Dependencies:abindanytimeapeaplotaskpassassortheadbackportsbase64encbeachmatbeeswarmBHBiobaseBiocBaseUtilsBiocGenericsBiocNeighborsBiocParallelBiocSingularBiostringsblusterbootbslibcachemCairocheckmatecirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcpp11crayoncrosstalkcurldata.tableDBIDECIPHERdecontamDelayedArrayDelayedMatrixStatsdigestDirichletMultinomialdoParalleldplyrdqrngDTevaluatefansifarverfastmapFNNfontawesomeforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggbeeswarmggforceggfunggnewscaleggplot2ggplotifyggraphggrastrggrepelggtreeGlobalOptionsgluegraphlayoutsgridExtragridGraphicsgtablehighrHmischtmlTablehtmltoolshtmlwidgetshttpuvhttrigraphIRangesirlbaiSEEisobanditeratorsjaneaustenrjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelistviewerlme4lpSolvemagrittrMASSMatrixMatrixGenericsmatrixStatsmediationmemoisemgcvmiamiaVizmimeminiUIminqaMultiAssayExperimentmunsellmvtnormnlmenloptrnnetopensslopenxlsxpatchworkpermutepheatmappillarpkgconfigplyrpngpolyclippromisespurrrR.methodsS3R.ooR.utilsR6raggrappdirsrbiomRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppMLRcppParallelRcppProgressreshape2rintrojsrjsonrlangrmarkdownrpartRSpectrarstudioapirsvdRtsneS4ArraysS4VectorssandwichsassScaledMatrixscalesscaterscuttleshapeshinyshinyAceshinydashboardshinyjsshinyWidgetsSingleCellExperimentsitmoslamsnowSnowballCsourcetoolsSparseArraysparseMatrixStatsstringistringrSummarizedExperimentsyssystemfontstextshapingtibbletidygraphtidyrtidyselecttidytexttidytreetinytextokenizerstreeioTreeSummarizedExperimenttweenrUCSC.utilsutf8uwotvctrsveganviporviridisviridisLitewithrxfunxtableXVectoryamlyulab.utilszipzlibbioczoo