Package: iPAC 1.51.0
Gregory Ryslik
iPAC: Identification of Protein Amino acid Clustering
iPAC is a novel tool to identify somatic amino acid mutation clustering within proteins while taking into account protein structure.
Authors:
iPAC_1.51.0.tar.gz
iPAC_1.51.0.zip(r-4.5)iPAC_1.51.0.zip(r-4.4)iPAC_1.51.0.zip(r-4.3)
iPAC_1.51.0.tgz(r-4.4-any)iPAC_1.51.0.tgz(r-4.3-any)
iPAC_1.51.0.tar.gz(r-4.5-noble)iPAC_1.51.0.tar.gz(r-4.4-noble)
iPAC_1.51.0.tgz(r-4.4-emscripten)iPAC_1.51.0.tgz(r-4.3-emscripten)
iPAC.pdf |iPAC.html✨
iPAC/json (API)
NEWS
| # Install 'iPAC' in R: |
| install.packages('iPAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- KRAS.Mutations - KRAS.Mutations
- PIK3CA.Mutations - PIK3CA.Mutations
On BioConductor:iPAC-1.51.0(bioc 3.21)iPAC-1.50.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:8338c572b4. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | OK | Nov 29 2024 |
| R-4.5-linux | OK | Nov 29 2024 |
| R-4.4-win | OK | Nov 29 2024 |
| R-4.4-mac | OK | Nov 29 2024 |
| R-4.3-win | OK | Nov 29 2024 |
| R-4.3-mac | OK | Nov 29 2024 |
Exports:ClusterFindget.AASeqget.AlignedPositionsget.Positionsget.Remapped.Orderget.SingleLetterCodenmcPlot.Protein.Linear
Dependencies:askpassBiobaseBiocGenericsBiostringscrayoncurlgdatagenericsGenomeInfoDbGenomeInfoDbDatagtoolshttrIRangesjsonlitelatticeMASSMatrixmimemulttestopensslpwalignR6S4Vectorsscatterplot3dsurvivalsysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Identification of Protein Amino acid mutation Clustering | iPAC-package iPAC |
| ClusterFind | ClusterFind |
| get.AASeq | get.AASeq |
| get.AlignedPositions | get.AlignedPositions |
| get.Positions | get.Positions |
| get.Remapped.Order | get.Remapped.Order |
| get.SingleLetterCode | get.SingleLetterCode |
| KRAS.Mutations | KRAS.Mutations |
| nmc | nmc |
| PIK3CA.Mutations | PIK3CA.Mutations |
| Plot.Protein.Linear | Plot.Protein.Linear |