Package: iClusterPlus 1.47.3

Qianxing Mo

iClusterPlus: Integrative clustering of multi-type genomic data

Integrative clustering of multiple genomic data using a joint latent variable model.

Authors:Qianxing Mo, Ronglai Shen

iClusterPlus_1.47.3.tar.gz
iClusterPlus_1.47.3.zip(r-4.7)iClusterPlus_1.47.3.zip(r-4.6)iClusterPlus_1.47.3.zip(r-4.5)
iClusterPlus_1.47.3.tgz(r-4.6-x86_64)iClusterPlus_1.47.3.tgz(r-4.6-arm64)iClusterPlus_1.47.3.tgz(r-4.5-x86_64)iClusterPlus_1.47.3.tgz(r-4.5-arm64)
iClusterPlus_1.47.3.tar.gz(r-4.6-arm64)iClusterPlus_1.47.3.tar.gz(r-4.6-x86_64)
iClusterPlus_1.47.3.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
iClusterPlus/json (API)

# Install 'iClusterPlus' in R:

install.packages('iClusterPlus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

openblas– Optimized BLAS
fortran– Runtime library for GNU Fortran applications

Datasets:

breast.chr17 - Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
clin4 - Uveal Melanoma data
cn - Uveal Melanoma data
coord - Genomic coordinates
gbm.exp - GBM data
gbm.mut - GBM data
gbm.seg - GBM data
glp - Good lattice points using the uniform design
methy25 - Uveal Melanoma data
mrna25 - Uveal Melanoma data
mut02 - Uveal Melanoma data
variation.hg18.v10.nov.2010 - Human genome variants of the NCBI 36 (hg18) assembly

On BioConductor:iClusterPlus-1.47.3(bioc 3.23)iClusterPlus-1.46.0(bioc 3.22)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multi-omics clustering fortran openblas

5.84 score 342 scripts 876 downloads 32 mentions 21 exports 3 dependencies

Last updated from:954aabde7e. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.

The latest version of this package failed to build. Look at thebuild logs for more information.

Target	Result	Time
bioc-checks	ERROR	154
linux-devel-arm64	NOTE	174
linux-devel-x86_64	NOTE	214
source / vignettes	OK	187
linux-release-arm64	NOTE	151
linux-release-x86_64	NOTE	199
macos-release-arm64	NOTE	179
macos-release-x86_64	NOTE	399
macos-oldrel-arm64	NOTE	139
macos-oldrel-x86_64	NOTE	303
windows-devel	NOTE	243
windows-release	NOTE	217
windows-oldrel	NOTE	266
wasm-release	OK	109

Exports:CNregions compute.pod getBIC getClusters getDevR iCluster iCluster2 iCluster2b iClusterBayes iClusterBayes2 iClusterPlus iClusterPlus2 iManual pcaVarPlot plotHeatmap plotHMBayes plotiCluster tune.iCluster2 tune.iCluster2b tune.iClusterBayes tune.iClusterPlus

Dependencies:irlba lattice Matrix

iClusterPlus

Rendered fromiClusterPlus.Rnwusingutils::Sweave

Last update: 2026-03-12
Started: 2014-01-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17	breast.chr17
A function to remove redundant copy number regions	CNregions
A function to compute the proportion of deviation from perfect block diagonal matrix	compute.pod
genomic coordinates	coord
GBM data	gbm gbm.exp gbm.mut gbm.seg
good lattice points using the uniform design	glp
Integrative clustering of multiple genomic data types	iCluster
Integrative clustering of multiple genomic data types	iCluster2
Integrative clustering of multi-omics data	iCluster2b
Integrative clustering of multiple genomic data types	iClusterBayes
Integrative clustering of multi-omics data	iClusterBayes2
Integrative clustering of multiple genomic data types	iClusterPlus
Integrative clustering of multi-omics data	iClusterPlus2
A function to make PCA variance plot of the combined matrix of multi-omics data matrices.	pcaVarPlot
A function to generate heatmap panels sorted by integrated cluster assignment.	plotHeatmap
A function to generate heatmap panels sorted by integrated cluster assignment.	plotHMBayes
A function to generate cluster separability matrix plot.	plotiCluster
A function to generate reproducibility index plot.	plotRI
Integrative clustering of multiple genomic data types	tune.iCluster2
Integrative clustering of multi-omics data	tune.iCluster2b
Integrative clustering of multiple genomic data	tune.iClusterBayes
Integrative clustering of multiple genomic data	tune.iClusterPlus
Uveal Melanoma data	clin4 cn methy25 methy25Anno mrna25 mut02 UM
Utility functions for iClusterPlus package	getBIC getClusters getDevR iManual
Human genome variants of the NCBI 36 (hg18) assembly	variation.hg18.v10.nov.2010