Package: iClusterPlus 1.47.3

Qianxing Mo

iClusterPlus: Integrative clustering of multi-type genomic data

Integrative clustering of multiple genomic data using a joint latent variable model.

Authors:Qianxing Mo, Ronglai Shen

iClusterPlus_1.47.3.tar.gz
iClusterPlus_1.47.3.zip(r-4.7)iClusterPlus_1.47.3.zip(r-4.6)iClusterPlus_1.47.3.zip(r-4.5)
iClusterPlus_1.47.3.tgz(r-4.6-x86_64)iClusterPlus_1.47.3.tgz(r-4.6-arm64)iClusterPlus_1.47.3.tgz(r-4.5-x86_64)iClusterPlus_1.47.3.tgz(r-4.5-arm64)
iClusterPlus_1.47.3.tar.gz(r-4.6-arm64)iClusterPlus_1.47.3.tar.gz(r-4.6-x86_64)
iClusterPlus_1.47.3.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iClusterPlus/json (API)
NEWS

# Install 'iClusterPlus' in R:
install.packages('iClusterPlus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • fortran– Runtime library for GNU Fortran applications
Datasets:

On BioConductor:iClusterPlus-1.47.3(bioc 3.23)iClusterPlus-1.46.0(bioc 3.22)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multi-omicsclusteringfortranopenblas

5.84 score 342 scripts 876 downloads 32 mentions 21 exports 3 dependencies

Last updated from:954aabde7e. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR154
linux-devel-arm64NOTE174
linux-devel-x86_64NOTE214
source / vignettesOK187
linux-release-arm64NOTE151
linux-release-x86_64NOTE199
macos-release-arm64NOTE179
macos-release-x86_64NOTE399
macos-oldrel-arm64NOTE139
macos-oldrel-x86_64NOTE303
windows-develNOTE243
windows-releaseNOTE217
windows-oldrelNOTE266
wasm-releaseOK109

Exports:CNregionscompute.podgetBICgetClustersgetDevRiClusteriCluster2iCluster2biClusterBayesiClusterBayes2iClusterPlusiClusterPlus2iManualpcaVarPlotplotHeatmapplotHMBayesplotiClustertune.iCluster2tune.iCluster2btune.iClusterBayestune.iClusterPlus

Dependencies:irlbalatticeMatrix

iClusterPlus

Rendered fromiClusterPlus.Rnwusingutils::Sweaveon Apr 20 2026.

Last update: 2026-03-12
Started: 2014-01-27

Readme and manuals

Help Manual

Help pageTopics
Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17breast.chr17
A function to remove redundant copy number regionsCNregions
A function to compute the proportion of deviation from perfect block diagonal matrixcompute.pod
genomic coordinatescoord
GBM datagbm gbm.exp gbm.mut gbm.seg
good lattice points using the uniform designglp
Integrative clustering of multiple genomic data typesiCluster
Integrative clustering of multiple genomic data typesiCluster2
Integrative clustering of multi-omics dataiCluster2b
Integrative clustering of multiple genomic data typesiClusterBayes
Integrative clustering of multi-omics dataiClusterBayes2
Integrative clustering of multiple genomic data typesiClusterPlus
Integrative clustering of multi-omics dataiClusterPlus2
A function to make PCA variance plot of the combined matrix of multi-omics data matrices.pcaVarPlot
A function to generate heatmap panels sorted by integrated cluster assignment.plotHeatmap
A function to generate heatmap panels sorted by integrated cluster assignment.plotHMBayes
A function to generate cluster separability matrix plot.plotiCluster
A function to generate reproducibility index plot.plotRI
Integrative clustering of multiple genomic data typestune.iCluster2
Integrative clustering of multi-omics datatune.iCluster2b
Integrative clustering of multiple genomic datatune.iClusterBayes
Integrative clustering of multiple genomic datatune.iClusterPlus
Uveal Melanoma dataclin4 cn methy25 methy25Anno mrna25 mut02 UM
Utility functions for iClusterPlus packagegetBIC getClusters getDevR iManual
Human genome variants of the NCBI 36 (hg18) assemblyvariation.hg18.v10.nov.2010