Package: iASeq 1.49.0
Yingying Wei
iASeq: iASeq: integrating multiple sequencing datasets for detecting allele-specific events
It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.
Authors:
iASeq_1.49.0.tar.gz
iASeq_1.49.0.zip(r-4.5)iASeq_1.49.0.zip(r-4.4)iASeq_1.49.0.zip(r-4.3)
iASeq_1.49.0.tgz(r-4.4-any)iASeq_1.49.0.tgz(r-4.3-any)
iASeq_1.49.0.tar.gz(r-4.5-noble)iASeq_1.49.0.tar.gz(r-4.4-noble)
iASeq_1.49.0.tgz(r-4.4-emscripten)iASeq_1.49.0.tgz(r-4.3-emscripten)
iASeq.pdf |iASeq.html✨
iASeq/json (API)
| # Install 'iASeq' in R: |
| install.packages('iASeq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- sampleASE_exprs - Example Dataset for iASeq
- sampleASE_refid - Example Dataset for iASeq
- sampleASE_repid - Example Dataset for iASeq
- sampleASE_studyid - Example Dataset for iASeq
On BioConductor:iASeq-1.49.0(bioc 3.20)iASeq-1.48.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:7cee083236
Exports:ASErawfitiASeqmotifplotBICplotMotifsingleEMfit
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| iASeq: integrating multiple sequencing datasets for detecting allele-specific events | iASeq-package iASeq |
| Single Study Based Statistics for Allele Specific Events | ASErawfit |
| iASeq Internal Functions | f0.loglike fdown.loglike fup.loglike iASeqmotiffit |
| Correlation Motif Fit for Allele Specific Events | iASeqmotif |
| BIC Plot | plotBIC |
| Correlation Motif Plot | plotMotif |
| Example Dataset for iASeq | sampleASE sampleASE_exprs sampleASE_refid sampleASE_repid sampleASE_studyid |
| Single Study EM Fit for Allele Specific Events | singleEMfit |