Package: iASeq 1.57.0

Yingying Wei

iASeq: iASeq: integrating multiple sequencing datasets for detecting allele-specific events

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Authors:Yingying Wei, Hongkai Ji

iASeq_1.57.0.tar.gz
iASeq_1.57.0.zip(r-4.7)iASeq_1.57.0.zip(r-4.6)iASeq_1.57.0.zip(r-4.5)
iASeq_1.57.0.tgz(r-4.6-any)iASeq_1.57.0.tgz(r-4.5-any)
iASeq_1.57.0.tar.gz(r-4.7-any)iASeq_1.57.0.tar.gz(r-4.6-any)
iASeq_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
iASeq/json (API)

# Install 'iASeq' in R:

install.packages('iASeq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

sampleASE_exprs - Example Dataset for iASeq
sampleASE_refid - Example Dataset for iASeq
sampleASE_repid - Example Dataset for iASeq
sampleASE_studyid - Example Dataset for iASeq

On BioConductor:iASeq-1.57.0(bioc 3.24)iASeq-1.56.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology snp rnaseq chipseq

3.90 score 1 scripts 354 downloads 4 mentions 5 exports 0 dependencies

Last updated from:b6780fb53e. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	186
linux-devel-x86_64	NOTE	160
source / vignettes	OK	145
linux-release-x86_64	NOTE	117
macos-release-arm64	NOTE	88
macos-oldrel-arm64	NOTE	91
windows-devel	NOTE	63
windows-release	NOTE	65
windows-oldrel	NOTE	77
wasm-release	OK	81

Exports:ASErawfit iASeqmotif plotBIC plotMotif singleEMfit

Dependencies:

iASeq Vignette

Rendered fromiASeqVignette.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
iASeq: integrating multiple sequencing datasets for detecting allele-specific events	iASeq-package iASeq
Single Study Based Statistics for Allele Specific Events	ASErawfit
iASeq Internal Functions	f0.loglike fdown.loglike fup.loglike iASeqmotiffit
Correlation Motif Fit for Allele Specific Events	iASeqmotif
BIC Plot	plotBIC
Correlation Motif Plot	plotMotif
Example Dataset for iASeq	sampleASE sampleASE_exprs sampleASE_refid sampleASE_repid sampleASE_studyid
Single Study EM Fit for Allele Specific Events	singleEMfit