Package: humanHippocampus2024 1.5.0

Christine Hou

humanHippocampus2024: Access to SRT and snRNA-seq data from spatial_HPC project

This is an ExperimentHub Data package that helps to access the spatially-resolved transcriptomics and single-nucleus RNA sequencing data. The datasets are generated from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors. The datasets are based on [spatial_hpc](https://github.com/LieberInstitute/spatial_hpc) project by Lieber Institute for Brain Development (LIBD) researchers and collaborators.

Authors:Christine Hou [aut, cre]

humanHippocampus2024_1.5.0.tar.gz
humanHippocampus2024_1.5.0.tar.gz(r-4.7-any)humanHippocampus2024_1.5.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
humanHippocampus2024/json (API)

# Install 'humanHippocampus2024' in R:

install.packages('humanHippocampus2024', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lieberinstitute/spatial_hpc/issues

Pkgdown/docs site:https://christinehou11.github.io

On BioConductor:humanHippocampus2024-1.5.0(data/experiment 3.24)humanHippocampus2024-1.4.0(data/experiment 3.23)

experimenthub sequencingdata spatialdata expressiondata tissue rnaseqdata datapkg

6.00 score 10 stars 9 scripts 0 exports 72 dependencies

Last updated from:e7188ffbd0. Checks:3 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	198
linux-devel	NOTE	277
source / vignettes	OK	465
linux-release	NOTE	399

Exports:

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magick magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs Rcpp rjson rlang RSQLite S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray SpatialExperiment stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Introduction to humanHippocampus2024

Rendered fromhumanHippocampus2024.Rmdusingknitr::rmarkdown

Last update: 2024-12-02
Started: 2024-09-26

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