Package: gwascat 2.37.0
gwascat: representing and modeling data in the EMBL-EBI GWAS catalog
Represent and model data in the EMBL-EBI GWAS catalog.
Authors:
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gwascat.pdf |gwascat.html✨
gwascat/json (API)
NEWS
# Install 'gwascat' in R: |
install.packages('gwascat', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- ebicat_2020_04_30 - Serialized gwaswloc instance from april 30 2020, sample of 50000 records
- efo.obo.g - Convert a typical OBO text file to a graphNEL instance
- g17SM - SnpMatrix instance from chr17
- gg17N - Genotype matrix from chr17 1000 genomes
- gr6.0_hg38 - Image of locon6 in GRanges, lifted over to hg38
- gw6.rs_17 - Character vector of rs numbers for SNP on chr17
- gwastagger - GRanges with LD information on 9998 SNP
- locon6 - Location data for 10000 SNP
- low17 - SnpMatrix instance from chr17
- si.hs.37 - Seqinfo for GRCh37
- si.hs.38 - Seqinfo for GRCh38
On BioConductor:gwascat-2.37.0(bioc 3.20)gwascat-2.36.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:5c502fb496
Exports:as_GRangesbindcadd_snvget_cached_gwascatgetRsidsgetTraitsgwascat_from_AHubgwcat_snapshotgwcex2gvizldtagrlocs4traitmakeCurrentGwascatobo2graphNELprocess_gwas_dataframeriskyAlleleCountsubsetByChromosomesubsetByTraitstopTraitstraitsManh
Dependencies:abindAnnotationDbiAnnotationHubaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomecachemclicliprcodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowsnpStatsSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryamlzlibbioc
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gwascat: structuring and querying the NHGRI GWAS catalog
Rendered fromgwascat.Rmd
usingknitr::rmarkdown
on Jul 05 2024.Last update: 2022-08-09
Started: 2020-05-02