NEWS
gwascat 2.21.7
USER VISIBLE CHANGES
- Oct 19 2020 -- peculiar content in CHR_ID and CHR_POS cause truncation. Improved read_tsv call
by setting col_types
gwascat 2.21
USER VISIBLE CHANGES
- April 30 2020 -- use BiocFileCache to manage retrieval from EBI
- May 2 2020 -- ebicat_2020_04_30 is a sample of 50000 records from a full retrieval
- May 2 2020 -- many data() elements moved to inst/legacy, LazyData turned off
gwascat 2.3.6
USER VISIBLE CHANGES
- traitsManh now emits an xlab concatenating genome tag to seqnames tag
gwascat 2.1.0
USER VISIBLE CHANGES
- GWAS catalog data curated at EMBL/EBI will now be used with
makeCurrentGwascat: Updated 3 August 2015, as comma-space delim. for
genes and EFO tags has been introduced
- Interfaces to the Experimental Factor Ontology (www.ebi.ac.uk/efo/)
are provided: efo.obo.g is an annotated graphNEL with the ontology
- Vignette gwascatOnt.Rmd introduced
gwascat 1.9.8
USER VISIBLE CHANGES
- makeCurrentGwascat has new arguments, useHg38seqinfo and altseqinfo.
These address the fact that the textual version of the catalog served
by NHGRI has hg38 addresses. Two snapshots of the data are available,
created Sept 8 2014, one direct in hg38 (gwrngs38 in data) and the
other by liftOver to hg19 addresses (gwrngs19)
gwascat 1.7.6
USER VISIBLE CHANGES
- bindcadd_snv has been added to bind CADD scores of Kircher et al. 2014
for SNVs to any GRanges query
gwascat 1.7.1
USER VISIBLE CHANGES
- gwrngs is now serialized and explicitly made available in global
workspace on attachment
- gwcat data.frame is not generated on attachment
CHANGES PRIOR TO VERSION 1.7.1
- May 30 2012 -- improve makeCurrentGwascat to handle chrX and p.Value suitably