Package: gtrellis 1.39.0
Zuguang Gu
gtrellis: Genome Level Trellis Layout
Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.
Authors:
gtrellis_1.39.0.tar.gz
gtrellis_1.39.0.zip(r-4.5)gtrellis_1.39.0.zip(r-4.4)gtrellis_1.39.0.zip(r-4.3)
gtrellis_1.39.0.tgz(r-4.4-any)gtrellis_1.39.0.tgz(r-4.3-any)
gtrellis_1.39.0.tar.gz(r-4.5-noble)gtrellis_1.39.0.tar.gz(r-4.4-noble)
gtrellis_1.39.0.tgz(r-4.4-emscripten)gtrellis_1.39.0.tgz(r-4.3-emscripten)
gtrellis.pdf |gtrellis.html✨
gtrellis/json (API)
NEWS
| # Install 'gtrellis' in R: |
| install.packages('gtrellis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jokergoo/gtrellis/issues
On BioConductor:gtrellis-1.39.0(bioc 3.21)gtrellis-1.38.0(bioc 3.20)
softwarevisualizationsequencing
Last updated 2 months agofrom:d40aa01366. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 08 2024 |
| R-4.5-win | NOTE | Dec 08 2024 |
| R-4.5-linux | NOTE | Dec 08 2024 |
| R-4.4-win | NOTE | Dec 08 2024 |
| R-4.4-mac | NOTE | Dec 08 2024 |
| R-4.3-win | OK | Dec 08 2024 |
| R-4.3-mac | OK | Dec 08 2024 |
Exports:add_heatmap_trackadd_ideogram_trackadd_lines_trackadd_points_trackadd_rect_trackadd_segments_trackadd_trackcurrent_trackget_cell_meta_datagtrellis_layoutgtrellis_show_index
Dependencies:askpassBiocGenericscirclizecolorspacecrayoncurlgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongGlobalOptionshttrIRangesjsonlitemimeopensslR6rjsonS4VectorsshapesysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| add heatmap to a new track | add_heatmap_track |
| Add ideogram track | add_ideogram_track |
| add lines to a new or exsited track | add_lines_track |
| add points to a new or exsited track | add_points_track |
| add retangles to a new or exsited track | add_rect_track |
| add segments to a new or exsited track | add_segments_track |
| Add self-defined graphics track by track | add_track |
| The index of current track | current_track |
| Get meta data in a cell | get_cell_meta_data |
| Initialize genome-level Trellis layout | gtrellis_layout |
| Show index on each cell | gtrellis_show_index |
