Package: gtrellis 1.39.0

Zuguang Gu

gtrellis: Genome Level Trellis Layout

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Authors:Zuguang Gu [aut, cre]

gtrellis_1.39.0.tar.gz
gtrellis_1.39.0.zip(r-4.5)gtrellis_1.39.0.zip(r-4.4)gtrellis_1.39.0.zip(r-4.3)
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gtrellis_1.39.0.tar.gz(r-4.5-noble)gtrellis_1.39.0.tar.gz(r-4.4-noble)
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gtrellis.pdf |gtrellis.html
gtrellis/json (API)
NEWS

# Install 'gtrellis' in R:
install.packages('gtrellis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jokergoo/gtrellis/issues

On BioConductor:gtrellis-1.39.0(bioc 3.21)gtrellis-1.38.0(bioc 3.20)

softwarevisualizationsequencing

8.24 score 39 stars 1 packages 37 scripts 449 downloads 5 mentions 11 exports 24 dependencies

Last updated 4 months agofrom:d40aa01366. Checks:3 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-winNOTEMar 08 2025
R-4.5-macNOTEMar 08 2025
R-4.5-linuxNOTEMar 08 2025
R-4.4-winNOTEMar 08 2025
R-4.4-macNOTEMar 08 2025
R-4.4-linuxNOTEMar 08 2025
R-4.3-winOKMar 08 2025
R-4.3-macOKMar 08 2025

Exports:add_heatmap_trackadd_ideogram_trackadd_lines_trackadd_points_trackadd_rect_trackadd_segments_trackadd_trackcurrent_trackget_cell_meta_datagtrellis_layoutgtrellis_show_index

Dependencies:askpassBiocGenericscirclizecolorspacecrayoncurlgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongGlobalOptionshttrIRangesjsonlitemimeopensslR6rjsonS4VectorsshapesysUCSC.utilsXVector

Make Genome-level Trellis Graph

Rendered fromgtrellis.Rmdusingknitron Mar 08 2025.

Last update: 2018-04-05
Started: 2014-12-24