{ "_id": "6a1acc801d7bb097a09de840", "Package": "gtrellis", "Type": "Package", "Title": "Genome Level Trellis Layout", "Version": "1.45.0", "Date": "2026-01-30", "Authors@R": "person(\"Zuguang\", \"Gu\", email = \"guzuguang@suat-sz.edu.cn\", role = c(\"aut\", \"cre\"),\ncomment = c('ORCID'=\"0000-0002-7395-8709\"))", "VignetteBuilder": "knitr", "Description": "Genome level Trellis graph visualizes genomic data\nconditioned by genomic categories (e.g. chromosomes). For each\ngenomic category, multiple dimensional data which are\nrepresented as tracks describe different features from\ndifferent aspects. This package provides high flexibility to\narrange genomic categories and to add self-defined graphics in\nthe plot.", "biocViews": "Software, Visualization, Sequencing", "URL": "https://github.com/jokergoo/gtrellis", "License": "MIT + file LICENSE", "Config/pak/sysreqs": "perl", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:54 UTC", "RemoteUrl": "https://github.com/bioc/gtrellis", "RemoteRef": "HEAD", "RemoteSha": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:06:12 UTC", "User": "root" }, "Author": "Zuguang Gu [aut, cre] (ORCID: )", "Maintainer": "Zuguang Gu ", "MD5sum": "a1a2f335b5955e30a905be1130952d28", "_user": "bioc", "_type": "src", "_file": "gtrellis_1.45.0.tar.gz", "_fileid": "d066ef52cd09f72daa507119fdbb4994ab9579a4a1ef0ae1559cd3e2b95a2307", "_filesize": 956484, "_sha256": "d066ef52cd09f72daa507119fdbb4994ab9579a4a1ef0ae1559cd3e2b95a2307", "_created": "2026-05-30T08:06:12.000Z", "_published": "2026-05-30T11:39:44.022Z", "_jobs": [ { "job": 78635480797, "time": 159, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7306715956" }, { "job": 78635480809, "time": 210, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306721368" }, { "job": 78635480818, "time": 240, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306724507" }, { "job": 78635480805, "time": 106, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307901095" }, { "job": 78635480807, "time": 161, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307905869" }, { "job": 78635289496, "time": 214, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306699945" }, { "job": 78635480801, "time": 116, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306711718" }, { "job": 78635480835, "time": 115, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306711713" }, { "job": 78635480823, "time": 112, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306711352" }, { "job": 78635480820, "time": 119, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306711928" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/gtrellis", "_commit": { "id": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380054 }, "_maintainer": { "name": "Zuguang Gu", "email": "guzuguang@suat-sz.edu.cn", "login": "jokergoo", "description": "A bioinformagician\n", "uuid": 449218, "orcid": "0000-0002-7395-8709" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "grid", "role": "Depends" }, { "package": "IRanges", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "circlize", "version": ">= 0.4.8", "role": "Imports" }, { "package": "GetoptLong", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "version": ">= 1.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "ComplexHeatmap", "version": ">= 1.99.0", "role": "Suggests" }, { "package": "Cairo", "role": "Suggests" }, { "package": "png", "role": "Suggests" }, { "package": "jpeg", "role": "Suggests" }, { "package": "tiff", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2026-05", "n": 1 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.0", "bioc": "3.24" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23" } ], "_topics": [ "software", "visualization", "sequencing" ], "_stars": 43, "_contributors": [ { "user": "jokergoo", "count": 183, "uuid": 449218 }, { "user": "cola-recount2", "count": 32, "uuid": 49999269 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 14, "uuid": 1744257 }, { "user": "dtenenba", "count": 8, "uuid": 2286826 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "link-ny", "count": 1, "uuid": 4392950 }, { "user": "sonali-bioc", "count": 1, "uuid": 6373953 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 642, "source": "https://www.bioconductor.org/packages/stats/bioc/gtrellis" }, "_mentions": 5, "_devurl": "https://github.com/jokergoo/gtrellis", "_searchresults": 61, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gtrellis.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/jokergoo/gtrellis", "_realowner": "bioc", "_cranurl": false, "_exports": [ "add_heatmap_track", "add_ideogram_track", "add_lines_track", "add_points_track", "add_rect_track", "add_segments_track", "add_track", "current_track", "get_cell_meta_data", "gtrellis_layout", "gtrellis_show_index" ], "_help": [ { "page": "add_heatmap_track", "title": "add heatmap to a new track", "topics": [ "add_heatmap_track" ] }, { "page": "add_ideogram_track", "title": "Add ideogram track", "topics": [ "add_ideogram_track" ] }, { "page": "add_lines_track", "title": "add lines to a new or exsited track", "topics": [ "add_lines_track" ] }, { "page": "add_points_track", "title": "add points to a new or exsited track", "topics": [ "add_points_track" ] }, { "page": "add_rect_track", "title": "add retangles to a new or exsited track", "topics": [ "add_rect_track" ] }, { "page": "add_segments_track", "title": "add segments to a new or exsited track", "topics": [ "add_segments_track" ] }, { "page": "add_track", "title": "Add self-defined graphics track by track", "topics": [ "add_track" ] }, { "page": "current_track", "title": "The index of current track", "topics": [ "current_track" ] }, { "page": "get_cell_meta_data", "title": "Get meta data in a cell", "topics": [ "get_cell_meta_data" ] }, { "page": "gtrellis_layout", "title": "Initialize genome-level Trellis layout", "topics": [ "gtrellis_layout" ] }, { "page": "gtrellis_show_index", "title": "Show index on each cell", "topics": [ "gtrellis_show_index" ] } ], "_readme": "https://github.com/bioc/gtrellis/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "circlize", "colorspace", "crayon", "generics", "GenomicRanges", "GetoptLong", "GlobalOptions", "IRanges", "rjson", "S4Vectors", "Seqinfo", "shape" ], "_vignettes": [ { "source": "gtrellis.Rmd", "filename": "gtrellis.html", "title": "Make Genome-level Trellis Graph", "author": "Zuguang Gu (z.gu@dkfz.de)", "engine": "knitr::rmarkdown", "headings": [], "created": "2014-12-24 15:54:10", "modified": "2024-02-27 12:38:58", "commits": 29 } ], "_score": 8.49797953663798, "_indexed": true, "_nocasepkg": "gtrellis", "_universes": [ "bioc", "jokergoo" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.45.0", "date": "2026-05-30T08:09:16.000Z", "distro": "noble", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "e326f022269da6dbbc7697d70b32612f99883b3379dfb54cce87141120b027dc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.6.0", "os": "linux", "version": "1.45.0", "date": "2026-05-30T08:09:40.000Z", "distro": "noble", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "f9108e871d13ff837b53d7a10959f2510227f881f8e32a1c9069ee788426eacb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.5.3", "os": "mac", "version": "1.45.0", "date": "2026-05-30T11:37:51.000Z", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "06ed886c302e5346afb18bc9e1af09320ecbb521ea3cbf82d2b1f6c71205eb5c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.6.0", "os": "mac", "version": "1.45.0", "date": "2026-05-30T11:38:24.000Z", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "5101225670b0fef7be8e723c39487655c6d1bd4e7ead36fe5916bdc30f762290", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.6.0", "os": "wasm", "version": "1.45.0", "date": "2026-05-30T08:08:32.000Z", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "1b838b21c370022c640a9207d4ea33569b93857e5a6f2b243e0a75f966f69dbd", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.7.0", "os": "win", "version": "1.45.0", "date": "2026-05-30T08:07:30.000Z", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "515b89ae712e09f91d885f8898b959258da6ccb7cc5e07259b1bba30f6338af1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.5.3", "os": "win", "version": "1.45.0", "date": "2026-05-30T08:07:30.000Z", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "15a62006b585b2e36760907947334f92ca49aed2ff84a4181dfa7a5c544b35a7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" }, { "r": "4.6.0", "os": "win", "version": "1.45.0", "date": "2026-05-30T08:07:37.000Z", "commit": "ddebf6d9620162daea4da74dd0d1b6476ae57011", "fileid": "ff23c903db9c25fe12122ad1eb3b06dc722d374602ccda168094010b51325833", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678746878" } ] }