Package: goseq 1.65.0

Federico Marini

goseq: Gene Ontology analyser for RNA-seq and other length biased data

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

Authors:Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre]

goseq_1.65.0.tar.gz
goseq_1.65.0.zip(r-4.7)goseq_1.65.0.zip(r-4.6)goseq_1.65.0.zip(r-4.5)
goseq_1.65.0.tgz(r-4.6-any)goseq_1.65.0.tgz(r-4.5-any)
goseq_1.65.0.tar.gz(r-4.7-any)goseq_1.65.0.tar.gz(r-4.6-any)
goseq_1.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
goseq/json (API)
NEWS

# Install 'goseq' in R:
install.packages('goseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/federicomarini/goseq/issues

Datasets:
  • genes - Androgen stimulation of prostate cancer Cell lines.

On BioConductor:goseq-1.65.0(bioc 3.24)goseq-1.64.0(bioc 3.23)

immunooncologysequencinggogeneexpressiontranscriptionrnaseqdifferentialexpressionannotationgenesetenrichmentkeggpathwayssoftware

10.13 score 2 stars 10 packages 752 scripts 2.5k downloads 132 mentions 7 exports 96 dependencies

Last updated from:8a3353bee0. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING246
linux-devel-x86_64NOTE488
source / vignettesOK490
linux-release-x86_64NOTE476
macos-release-arm64NOTE258
macos-oldrel-arm64NOTE309
windows-develNOTE1123
windows-releaseNOTE1248
windows-oldrelNOTE1003
wasm-releaseOK212

Exports:getgogetlengthgoseqmakesplinenullpplotPWFsupportedOrganisms

Dependencies:abindAnnotationDbiaskpassBHBiasedUrnBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrfastmapfilelockformatRfutile.loggerfutile.optionsgeneLenDataBasegenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesglueGO.dbhmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

goseq User's Guide

Rendered fromgoseq.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2024-06-12
Started: 2013-11-01