Package: goseq 1.59.0

Federico Marini

goseq: Gene Ontology analyser for RNA-seq and other length biased data

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

Authors:Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre]

goseq_1.59.0.tar.gz
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goseq.pdf |goseq.html✨
goseq/json (API)
NEWS

# Install 'goseq' in R:
install.packages('goseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/federicomarini/goseq/issues

Datasets:
  • genes - Androgen stimulation of prostate cancer Cell lines.

On BioConductor:goseq-1.59.0(bioc 3.21)goseq-1.58.0(bioc 3.20)

immunooncologysequencinggogeneexpressiontranscriptionrnaseqdifferentialexpressionannotationgenesetenrichmentkeggpathwayssoftware

9.79 score 1 stars 9 packages 636 scripts 2.3k downloads 132 mentions 7 exports 97 dependencies

Last updated 4 months agofrom:87e9f39ded. Checks:3 OK, 2 NOTE, 1 WARNING, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macWARNINGJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winERRORJan 28 2025
R-4.3-macERRORJan 28 2025

Exports:getgogetlengthgoseqmakesplinenullpplotPWFsupportedOrganisms

Dependencies:abindAnnotationDbiaskpassBHBiasedUrnBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgeneLenDataBasegenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesglueGO.dbhmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

goseq User's Guide

Rendered fromgoseq.Rnwusingutils::Sweaveon Jan 28 2025.

Last update: 2024-06-12
Started: 2013-11-01